# List of top-scoring protein chains for TR464.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jnyA	67	0.05124		
2pk7A	69	0.4455		
2jwyA	168	5.615		
2js4A	70	5.819		
4gpd1	333	9.791		
2hf1A	68	14.12		
2go2A	163	24.40		
1z1aA	142	27.89	d.339.1.1	124344
1zhiB	138	27.97	d.339.1.1	125097
1zbxB	140	34.26	d.339.1.1	124877
2a2lA	145	39.30	d.110.9.1	126035
3dbaA	180	42.41		
2vjtA	161	43.44		
1nq6A	302	52.46	c.1.8.3	92046
1v6tA	255	53.76	c.6.2.5	113550
1vbpA	149	55.47	b.77.3.1	108487
1vboA	149	55.55	b.77.3.1	108479
1j4tA	149	55.79	b.77.3.1	71515
2ct7A	86	59.10	g.44.1.4	130791
1crwG	333	59.45	c.2.1.3,d.81.1.1	30026,39941
1dssG	333	59.71	c.2.1.3,d.81.1.1	30022,39937
2curA	69	62.82	g.39.1.3,g.39.1.3	130820,130821
2j6aA	141	74.61		
3gpdG	334	77.94	c.2.1.3,d.81.1.1	30029,39944
1iruJ	205	81.98	d.153.1.4	71361
1agiA	125	86.66	d.5.1.1	37303