# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	0.9856		
1e1aA	314	8.454	b.68.6.1	59155
2hf1A	68	8.836		
1pjxA	314	13.87	b.68.6.1	104167
2ioyA	283	25.84		
1obfO	335	28.84	c.2.1.3,d.81.1.1	86768,86769
2jwyA	168	30.01		
3bqkA	360	41.48		
1g9zA	152	41.90	d.95.2.1	60408
1rypI	222	49.85	d.153.1.4	41877
1ypvA	313	50.16		
2pkhA	148	51.64		
1v54J	59	52.56	f.23.4.1	100331
2occJ	59	53.73	f.23.4.1	43524
2gnpA	266	56.70		
1ordA	730	58.42	c.23.1.4,c.67.1.5,d.125.1.1	31274,34503,41124
2oggA	152	59.49		
1c4kA	730	60.13	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
1l7dA	384	61.09	c.2.1.4,c.23.12.2	77774,77775
2o7tA	199	70.07		
1k3tA	359	71.20	c.2.1.3,d.81.1.1	72022,72023
1zjkA	403	75.88	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1crwG	333	80.80	c.2.1.3,d.81.1.1	30026,39941
1ryp2	233	80.94		
2ooiA	162	82.62		
1pmaP	211	83.28	d.153.1.4	41863
2c34A	116	83.44	b.1.26.1	129710
2q4uA	272	84.68		
1iruK	201	87.70	d.153.1.4	71362