# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	0.8035		
2hf1A	68	7.476		
1e1aA	314	9.722	b.68.6.1	59155
1pjxA	314	15.23	b.68.6.1	104167
2ioyA	283	29.25		
2oggA	152	33.23		
2jwyA	168	37.41		
1obfO	335	37.49	c.2.1.3,d.81.1.1	86768,86769
1l7dA	384	37.77	c.2.1.4,c.23.12.2	77774,77775
1g0u1	266	43.35		
1ypvA	313	43.97		
1g9zA	152	48.82	d.95.2.1	60408
1rypI	222	61.36	d.153.1.4	41877
1ryp2	233	68.47		
2o7tA	199	71.69		
1edhA	226	72.14	b.1.6.1,b.1.6.1	22198,22199
1c4kA	730	75.88	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
8abp	306	76.15		
1pmaP	211	78.54	d.153.1.4	41863
1iruK	201	81.33	d.153.1.4	71362
2i1mA	333	82.00		
1zjkA	403	82.50	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
3bu3A	306	84.49		
3bqkA	360	86.02		
1crwG	333	86.51	c.2.1.3,d.81.1.1	30026,39941
1k3tA	359	87.03	c.2.1.3,d.81.1.1	72022,72023