# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	0.3202		
2hf1A	68	2.258		
1c4kA	730	12.51	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
2oggA	152	15.87		
1ordA	730	16.66	c.23.1.4,c.67.1.5,d.125.1.1	31274,34503,41124
2v2fF	390	16.75		
2pkhA	148	19.66		
2ioyA	283	19.99		
1auk	489	22.90		
1e1aA	314	24.03	b.68.6.1	59155
1pjxA	314	26.08	b.68.6.1	104167
2gnpA	266	26.95		
2ooiA	162	35.17		
1rh6A	55	35.75	a.6.1.7	104935
2c5wB	385	36.24	e.3.1.1	129958
2o7tA	199	37.61		
2p3uA	52	44.14		
1g0u1	266	50.41		
1v6tA	255	51.14	c.6.2.5	113550
1wqwA	235	51.55	b.34.1.1,d.104.1.2	121179,121180
2pr3B	51	51.59		
1obfO	335	51.63	c.2.1.3,d.81.1.1	86768,86769
2fa1A	160	53.04	d.190.1.2	133182
1w9yA	319	53.13	b.82.2.1	120801
1hcgB	51	53.36	g.3.11.1	44231
1edhA	226	55.13	b.1.6.1,b.1.6.1	22198,22199
1xw8A	252	62.46	c.6.2.5	116111
1u1sA	82	63.40	b.38.1.2	119451
1jj2K	164	64.13	c.12.1.1	63096
1z6eB	52	64.54	g.3.11.1	124519
1qhuA	460	67.12	b.66.1.1,b.66.1.1	27530,27531
1z1zA	131	67.16	d.323.1.1	124366
1oa8A	133	70.11	b.145.1.1	92698
8abp	306	73.48		
2c3bA	172	75.42	b.62.1.1	129723
1buoA	121	76.89	d.42.1.1	38631
2obbA	142	82.47		
1onxA	390	82.76	b.92.1.7,c.1.9.13	87176,87177
2ihcA	124	83.28		
1e3jA	352	85.23	b.35.1.2,c.2.1.1	24765,29781
2c34A	116	85.68	b.1.26.1	129710
1azwA	313	86.98	c.69.1.7	34658
1gydB	315	88.27	b.67.2.1	70751
2jsnA	96	89.28