# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	0.6749		
2hf1A	68	2.155		
2oggA	152	8.832		
2ioyA	283	18.94		
1e1aA	314	20.98	b.68.6.1	59155
1obfO	335	25.03	c.2.1.3,d.81.1.1	86768,86769
1pjxA	314	25.50	b.68.6.1	104167
2pkhA	148	34.82		
1k3tA	359	39.22	c.2.1.3,d.81.1.1	72022,72023
1g0u1	266	39.52		
2jwyA	168	41.70		
2o7tA	199	43.90		
1crwG	333	49.51	c.2.1.3,d.81.1.1	30026,39941
1l7dA	384	60.09	c.2.1.4,c.23.12.2	77774,77775
2occJ	59	60.55	f.23.4.1	43524
1g9zA	152	65.05	d.95.2.1	60408
1rh6A	55	66.08	a.6.1.7	104935
1ryp2	233	67.32		
1v54J	59	67.68	f.23.4.1	100331
2o20A	332	68.30		
3ezmA	101	69.18	b.89.1.1	28395
2fn9A	290	70.73		
2ooiA	162	71.88		
1rypI	222	72.12	d.153.1.4	41877
1w9yA	319	76.03	b.82.2.1	120801
1eazA	125	76.44	b.55.1.1	70113
2c34A	116	80.56	b.1.26.1	129710
1edhA	226	82.54	b.1.6.1,b.1.6.1	22198,22199
1iruK	201	83.53	d.153.1.4	71362