# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.6334		
2jwyA	168	2.183		
3bqkA	360	3.863		
1g9zA	152	4.629	d.95.2.1	60408
2gnpA	266	8.942		
2j6aA	141	10.76		
2pkhA	148	13.85		
2jepA	395	20.84		
2q4uA	272	25.00		
2ooiA	162	27.95		
1l7dA	384	28.60	c.2.1.4,c.23.12.2	77774,77775
2oggA	152	31.78		
2fa1A	160	48.74	d.190.1.2	133182
1byuA	216	51.61	c.37.1.8	32032
1v6tA	255	53.12	c.6.2.5	113550
3cdlA	203	53.87		
1bp7A	152	58.59	d.95.2.1	40568
1ryp2	233	59.84		
1nsf	273	60.29		
2tpt	440	61.50		
2c3bA	172	62.00	b.62.1.1	129723
2occJ	59	63.03	f.23.4.1	43524
1rypI	222	65.27	d.153.1.4	41877
1buoA	121	69.12	d.42.1.1	38631
2ikkA	173	69.39		
2ioyA	283	71.41		
2jobA	102	72.42		
1soxA	466	74.56	b.1.18.6,d.120.1.1,d.176.1.1	21947,41090,42563
2o20A	332	74.81		
1v54J	59	75.22	f.23.4.1	100331
2rerA	173	78.51		
1g0uL	241	78.76	d.153.1.4	41894
1p36A	164	78.87	d.2.1.3	93978