# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2j6aA 141 0.7732 2hf1A 68 1.024 2e7uA 424 1.520 1ynpA 317 1.790 2dpmA 284 2.179 c.66.1.28 34246 1g0u1 266 2.436 2v2fF 390 4.241 1l4zB 136 5.035 d.15.5.1 77704 1u8fO 335 5.950 c.2.1.3,d.81.1.1 119626,119627 1vqqA 646 6.298 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 2in1A 175 6.497 d.20.1.4 137521 2qqzA 126 7.656 1brmA 367 7.697 c.2.1.3,d.81.1.1 30030,39945 1k8tA 510 8.566 e.41.1.1 68316 2epjA 434 9.756 1vicA 262 10.68 c.68.1.13 100756 1gypA 358 11.06 c.2.1.3,d.81.1.1 30004,39919 1lqaA 346 12.62 c.1.7.1 84674 2fn9A 290 12.79 2o7tA 199 13.59 1pmaA 233 13.72 d.153.1.4 41918 2z6wA 165 14.25 2qqjA 325 14.61 1crwG 333 14.67 c.2.1.3,d.81.1.1 30026,39941 2gnpA 266 15.29 1mq4A 272 15.33 d.144.1.7 91391 1c4kA 730 15.59 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 2nooA 502 16.19 1og6A 298 16.85 c.1.7.1 86984 1ypvA 313 17.71 1yndA 165 18.28 b.62.1.1 123721 2cmtA 172 18.44 1ohvA 472 18.48 c.67.1.4 93031 2cfeA 162 18.74 b.62.1.1 130375 1bsgA 266 22.40 e.3.1.1 42729 1h1wA 289 23.25 d.144.1.7 83460 1hrdA 449 24.74 c.2.1.7,c.58.1.1 30219,33867 2vpzA 765 25.08 1kigL 51 25.95 g.3.11.1 44239 1t4bA 367 26.19 c.2.1.3,d.81.1.1 106406,106407 1pjxA 314 26.42 b.68.6.1 104167 1rypB 250 26.74 d.153.1.4 41933 2jwyA 168 27.83 1n9eA 787 27.99 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2p74A 263 28.81 1rypI 222 29.06 d.153.1.4 41877 2avdA 219 29.71 c.66.1.1 127377 1enfA 212 29.86 b.40.2.2,d.15.6.1 25198,37787 2gsaA 432 31.34 c.67.1.4 34446 2f57A 317 31.41 1zlqA 502 31.90 c.94.1.1 125253 2ntkA 222 33.12 d.153.2.1 138583 2c5wB 385 33.36 e.3.1.1 129958 2boyA 254 34.25 3cdlA 203 35.22 1i8kB 124 35.83 b.1.1.1 71131 1rqbA 539 36.34 a.5.7.2,c.1.10.5 105057,105058 2ivsA 314 38.63 1t7vA 278 38.73 b.1.1.2,d.19.1.1 112302,112303 1obfO 335 38.86 c.2.1.3,d.81.1.1 86768,86769 1d1dA 262 39.94 a.28.3.1,a.73.1.1 16958,18335 1k3tA 359 41.55 c.2.1.3,d.81.1.1 72022,72023 1vdnA 162 43.00 b.62.1.1 120006 2gdnA 267 45.81 1d3gA 367 45.92 c.1.4.1 28600 1v1pA 211 46.00 b.40.2.2,d.15.6.1 108268,108269 2gwnA 452 47.85 1o4yA 288 49.45 b.29.1.2 92473 1qxoA 388 49.55 d.258.1.1 96539 1anf 370 50.44 2rekA 199 50.62 3cg5A 265 50.70 1me4A 215 50.73 d.3.1.1 79023 1qnrA 344 51.85 c.1.8.3 28834 1mb4A 370 52.68 c.2.1.3,d.81.1.1 78908,78909 1jovA 270 53.07 b.30.5.7 84192 3b2tA 311 53.30 2e67A 264 53.66 1rypL 212 53.81 d.153.1.4 41880 1gq2A 555 54.38 c.2.1.7,c.58.1.3 70308,70309 2nruA 307 55.16 2e27H 126 56.27 1kxrA 339 57.00 d.3.1.3 73175 1qtsA 247 57.90 b.1.10.1,d.105.1.1 22313,40789 1hnnA 282 58.35 c.66.1.15 65895 1zsxA 347 59.35 1xw8A 252 59.68 c.6.2.5 116111 1l6nA 289 59.80 a.61.1.1,a.73.1.1 73624,73625 3bqkA 360 60.88 1rypC 244 62.43 d.153.1.4 41934 3bt3A 148 62.48 1cf9A 753 63.00 c.23.16.3,e.5.1.1 31441,42815 1ui7A 638 64.88 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 1oq1A 223 65.84 b.29.1.17 93408 8abp 306 66.84 1jmaA 290 69.21 b.1.1.1 63177 1x13A 401 69.71 1iruK 201 69.84 d.153.1.4 71362 2go3A 267 70.98 d.14.1.7,d.14.1.7 135422,135423 1s4qA 228 71.87 c.37.1.1 98507 2dqrA 122 72.52 1ag8A 499 72.81 c.82.1.1 35341 1rjoA 646 73.32 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 2bzlA 325 74.95 2bdvA 231 75.17 d.303.1.1 128345 1xiyA 182 75.23 c.47.1.10 122022 1qtwA 285 75.67 c.1.15.1 29392 2bitX 165 76.65 b.62.1.1 128590 1ecfA 504 77.99 c.61.1.1,d.153.1.1 34053,41820 1w2tA 432 79.24 b.29.1.19,b.67.2.3 120607,120608 1o6lA 337 79.31 d.144.1.7 81092 2hqyA 305 79.42 2oggA 152 81.39 2vchA 480 82.60 1xffA 240 84.39 d.153.1.1 109580 1ecfB 504 84.62 c.61.1.1,d.153.1.1 34054,41821 1u5tA 233 85.23 a.4.5.54,a.4.5.54 107684,107685 2aaoA 166 85.92 1mvwB 145 88.03 i.15.1.1 79524