# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	0.8830		
2hf1A	68	8.638		
1e1aA	314	10.30	b.68.6.1	59155
2oggA	152	18.88		
1pjxA	314	19.12	b.68.6.1	104167
2pkhA	148	19.90		
2ioyA	283	23.99		
3bqkA	360	29.70		
2d1lA	253	34.63		
1obfO	335	38.51	c.2.1.3,d.81.1.1	86768,86769
2jepA	395	39.20		
1w9yA	319	45.53	b.82.2.1	120801
2o7tA	199	45.75		
1l7dA	384	47.05	c.2.1.4,c.23.12.2	77774,77775
1v54J	59	48.03	f.23.4.1	100331
8abp	306	49.04		
2ooiA	162	52.51		
1g0u1	266	53.02		
2occJ	59	58.10	f.23.4.1	43524
1ordA	730	60.52	c.23.1.4,c.67.1.5,d.125.1.1	31274,34503,41124
1g9zA	152	62.01	d.95.2.1	60408
1c4kA	730	65.23	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
2c34A	116	66.66	b.1.26.1	129710
1k3tA	359	69.86	c.2.1.3,d.81.1.1	72022,72023
1z1zA	131	70.01	d.323.1.1	124366
1edhA	226	70.62	b.1.6.1,b.1.6.1	22198,22199
2jobA	102	70.94		
2gnpA	266	71.23		
1rypI	222	75.25	d.153.1.4	41877
1un3A	123	78.49	d.5.1.1	99646
1zjkA	403	81.60	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2jwyA	168	84.34		
1oa8A	133	85.08	b.145.1.1	92698
1llnA	262	85.57	d.165.1.1	84625
2fa1A	160	88.20	d.190.1.2	133182
1rh6A	55	88.78	a.6.1.7	104935
2fn9A	290	89.67