# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	0.8160		
2hf1A	68	10.38		
2oggA	152	11.81		
2ioyA	283	17.78		
2pkhA	148	18.21		
1e1aA	314	19.05	b.68.6.1	59155
3bqkA	360	19.78		
1pjxA	314	31.81	b.68.6.1	104167
1obfO	335	34.53	c.2.1.3,d.81.1.1	86768,86769
2jwyA	168	36.72		
1l7dA	384	38.22	c.2.1.4,c.23.12.2	77774,77775
8abp	306	38.71		
1g0u1	266	42.91		
2ooiA	162	44.42		
1k3tA	359	45.08	c.2.1.3,d.81.1.1	72022,72023
1zjkA	403	48.63	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1c4kA	730	49.31	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
2d1lA	253	51.53		
2gnpA	266	53.09		
1g9zA	152	53.14	d.95.2.1	60408
2jepA	395	53.48		
1w9yA	319	54.72	b.82.2.1	120801
2o7tA	199	55.80		
1llnA	262	56.04	d.165.1.1	84625
1rypI	222	56.74	d.153.1.4	41877
1ordA	730	56.76	c.23.1.4,c.67.1.5,d.125.1.1	31274,34503,41124
1edhA	226	58.07	b.1.6.1,b.1.6.1	22198,22199
1crwG	333	61.84	c.2.1.3,d.81.1.1	30026,39941
2c34A	116	63.02	b.1.26.1	129710
2ila	155	65.00		
2occJ	59	69.85	f.23.4.1	43524
1v54J	59	82.23	f.23.4.1	100331
1oa8A	133	83.79	b.145.1.1	92698
2cs2A	134	87.46		
1g0uL	241	88.41	d.153.1.4	41894