# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.9370		
2j6aA	141	4.957		
1soxA	466	11.58	b.1.18.6,d.120.1.1,d.176.1.1	21947,41090,42563
1l7dA	384	15.47	c.2.1.4,c.23.12.2	77774,77775
1g9zA	152	19.16	d.95.2.1	60408
1w9yA	319	20.57	b.82.2.1	120801
3bqkA	360	20.98		
2ooiA	162	29.80		
2gnpA	266	30.75		
1e2tA	284	33.02	d.3.1.5	37121
2jwyA	168	34.86		
174lA	164	39.04	d.2.1.3	36956
2o5cA	659	41.39		
2q4uA	272	46.48		
2zcmA	192	50.02		
2ila	155	53.84		
2co5A	99	54.82		
2jepA	395	58.81		
1v6tA	255	67.93	c.6.2.5	113550
1qtsA	247	73.26	b.1.10.1,d.105.1.1	22313,40789
1u1sA	82	82.08	b.38.1.2	119451