# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	4.859		
1s98A	107	7.614	b.124.1.1	105377
1gqpA	221	19.48	b.18.1.9	70372
2j6aA	141	24.85		
2pd8A	149	26.27		
2pdrA	149	28.41		
3d72A	149	30.17		
1r94A	118	36.96	b.124.1.1	97251
1si2A	149	38.62	b.34.14.1	105569
2bzgA	232	38.82	c.66.1.36	129559
1u69A	163	46.53	d.32.1.7	107699
1h3fA	432	46.57	c.26.1.1,d.66.1.4	76631,76632
2j4hA	193	50.63		
3bqxA	150	50.89		
1fr1A	361	52.92	e.3.1.1	42734
1nwpA	128	54.68	b.6.1.1	23011
3bdwB	120	55.56		
1gnkA	112	55.97	d.58.5.1	39073
1fa8A	135	57.26	d.32.1.1	38486
1yreA	197	58.21	d.108.1.1	123919
1vm0A	130	59.94	d.68.6.2	108873
1k9jA	139	60.33	d.169.1.1	68353
1rgzA	363	63.84	e.3.1.1	97457
2qv7A	337	65.87		
2gw8A	114	66.01		
2rbbA	141	66.08		
1iqzA	81	66.99	d.58.1.4	66281
2q48A	166	68.22	d.32.1.9	139829
1onhA	364	69.37	e.3.1.1	93357
2eg2A	112	69.66		
1t9iA	163	69.97	d.95.2.1	112360
2gj3A	120	73.40		
2jhmF	218	73.54		
1fwxA	595	73.97	b.6.1.4,b.69.3.1	60069,60070
1dm9A	133	75.56	d.66.1.3	39560
3fib	249	75.92		
1h0xA	100	76.98	d.68.6.1	76451
1g9zA	152	77.01	d.95.2.1	60408
1lla	628	80.29		
1yvcA	70	81.18	b.40.4.12	124094
1yqsA	349	81.93	e.3.1.1	123899
1nnxA	109	82.49	b.40.10.1	92013
2bphA	140	85.89		
1bp7A	152	89.84	d.95.2.1	40568