# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	3.805		
1tjyA	316	8.074	c.93.1.1	107062
2fvyA	309	15.06	c.93.1.1	134227
2fn9A	290	16.18		
1l4dB	122	22.62	d.15.5.1	77684
1gca	309	24.00		
2hf1A	68	24.29		
2h3hA	313	28.96		
2gfgA	193	30.92		
1ne9A	335	39.59	d.108.1.4,d.108.1.4	91839,91840
1h8mA	140	44.82	d.110.4.1	60782
2c34A	116	48.88	b.1.26.1	129710
2ek5A	129	49.04		
2qvcA	313	50.03		
2hqbA	296	51.13		
1o12A	376	53.27	b.92.1.5,c.1.9.10	80758,80759
1ryp1	222	53.36		
3d02A	303	54.44		
2qu7A	288	56.00		
1g0uC	243	57.78	d.153.1.4	41948
1g3kA	174	64.28	d.153.1.4	41989
1yarA	233	67.22	d.153.1.4	122837
1rypK	198	68.98	d.153.1.4	41879
1rh6A	55	69.70	a.6.1.7	104935
2etxA	209	74.88		
1yarH	217	77.78	d.153.1.4	122844
1ryp2	233	81.16		
2bdtA	189	82.49	c.37.1.25	128344
1rypD	241	87.65	d.153.1.4	41935
3bk5A	237	89.42