# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	1.523		
2hf1A	68	5.726		
1h8mA	140	23.11	d.110.4.1	60782
1tjyA	316	27.27	c.93.1.1	107062
1o12A	376	29.62	b.92.1.5,c.1.9.10	80758,80759
2fvyA	309	36.36	c.93.1.1	134227
1suwA	249	39.96	e.52.1.1	106027
1l4dB	122	45.90	d.15.5.1	77684
2c34A	116	50.02	b.1.26.1	129710
2j9iA	421	52.95		
1ne9A	335	60.31	d.108.1.4,d.108.1.4	91839,91840
2i7qA	402	66.59		
2gfgA	193	67.04		
2ek5A	129	67.45		
1xiwB	79	67.70	b.1.1.4	115368
2fn9A	290	76.18		
1rypK	198	81.97	d.153.1.4	41879
1g3kA	174	82.64	d.153.1.4	41989
1yarA	233	82.93	d.153.1.4	122837
1gca	309	86.30		
1g0uC	243	88.67	d.153.1.4	41948