# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	0.9635		
2hf1A	68	2.740		
1tjyA	316	10.76	c.93.1.1	107062
2fvyA	309	15.39	c.93.1.1	134227
1h8mA	140	24.93	d.110.4.1	60782
2nteA	210	29.72		
2fn9A	290	30.21		
1o12A	376	30.90	b.92.1.5,c.1.9.10	80758,80759
1rh6A	55	32.23	a.6.1.7	104935
1xhhA	91	33.24		
1l4dB	122	38.14	d.15.5.1	77684
1gca	309	39.54		
1ne9A	335	44.50	d.108.1.4,d.108.1.4	91839,91840
2vhsA	217	45.57		
2i7qA	402	47.89		
2h3hA	313	48.52		
1xw8A	252	50.73	c.6.2.5	116111
1g3kA	174	55.22	d.153.1.4	41989
1e6cA	173	56.04	c.37.1.2	59296
2j9iA	421	57.72		
1ryp1	222	57.92		
1suwA	249	62.22	e.52.1.1	106027
2ek5A	129	62.75		
2couA	109	65.97		
1rfsA	139	67.09	b.33.1.1	24434
1v6tA	255	67.82	c.6.2.5	113550
1bywA	110	70.29	d.110.3.6	40912
1jovA	270	70.51	b.30.5.7	84192
2hhiA	204	70.87		
1ywyA	74	70.90	b.55.2.1	124166
3bk5A	237	72.55		
1k7jA	206	75.99	d.115.1.1	72103
1w2lA	99	79.92		
2zb9A	214	80.00		
1zvpA	133	81.39	d.58.18.9,d.58.18.9	125714,125715
2p19A	149	84.77		
2hkuA	215	85.97		
1rfs	139	86.15		
2qorA	204	86.42		
1u1sA	82	87.03	b.38.1.2	119451
2hu9A	130	87.21		
3d02A	303	88.90