# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	1.526		
2hf1A	68	4.841		
1tjyA	316	10.78	c.93.1.1	107062
2fn9A	290	13.58		
2fvyA	309	17.28	c.93.1.1	134227
1l4dB	122	24.18	d.15.5.1	77684
1gca	309	24.68		
2qu7A	288	29.03		
1h8mA	140	30.24	d.110.4.1	60782
2hqbA	296	35.06		
1ne9A	335	35.40	d.108.1.4,d.108.1.4	91839,91840
2h3hA	313	41.21		
1ryp1	222	43.83		
2c34A	116	44.75	b.1.26.1	129710
1ryp2	233	51.53		
2ek5A	129	53.22		
1k7jA	206	53.43	d.115.1.1	72103
1g0uC	243	58.72	d.153.1.4	41948
1yarA	233	63.31	d.153.1.4	122837
1rh6A	55	63.46	a.6.1.7	104935
2i7qA	402	66.50		
2qvcA	313	67.60		
3d02A	303	72.67		
1v54J	59	74.02	f.23.4.1	100331
3by6A	126	74.03		
1knqA	175	75.58	c.37.1.17	72786
1rypF	233	80.14	d.153.1.4	41937
1g3kA	174	80.49	d.153.1.4	41989
1rypD	241	81.15	d.153.1.4	41935
1o12A	376	83.36	b.92.1.5,c.1.9.10	80758,80759
1rypK	198	84.64	d.153.1.4	41879
2ioyA	283	86.01		
2etxA	209	88.64		
2zb9A	214	89.16		
2dri	271	89.81