# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	2.176		
2hf1A	68	7.978		
1tjyA	316	12.54	c.93.1.1	107062
2fn9A	290	13.47		
2fvyA	309	16.71	c.93.1.1	134227
1l4dB	122	25.03	d.15.5.1	77684
2hqbA	296	27.13		
1gca	309	28.86		
2gfgA	193	30.82		
2c34A	116	33.38	b.1.26.1	129710
2qu7A	288	35.15		
1ne9A	335	35.89	d.108.1.4,d.108.1.4	91839,91840
1h8mA	140	40.52	d.110.4.1	60782
2h3hA	313	44.58		
2ek5A	129	51.86		
2i7qA	402	57.42		
1v54J	59	65.51	f.23.4.1	100331
2fqxA	318	67.59		
1knqA	175	69.96	c.37.1.17	72786
2qvcA	313	71.05		
1suwA	249	74.15	e.52.1.1	106027
3by6A	126	75.58		
2etxA	209	77.74		
1ryp1	222	79.47		
1rh6A	55	81.28	a.6.1.7	104935
2j9iA	421	86.46		
2hu9A	130	87.11		
2g1pA	278	89.33