# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	2.940		
2hf1A	68	6.706		
1tjyA	316	19.81	c.93.1.1	107062
2fvyA	309	24.06	c.93.1.1	134227
1l4dB	122	25.08	d.15.5.1	77684
2fn9A	290	27.17		
1h8mA	140	34.08	d.110.4.1	60782
2ek5A	129	35.91		
1o12A	376	41.28	b.92.1.5,c.1.9.10	80758,80759
1gca	309	41.75		
1yarA	233	43.92	d.153.1.4	122837
3cnvA	162	46.16		
1ryp1	222	47.14		
2p19A	149	48.94		
1g0uC	243	54.28	d.153.1.4	41948
1k7jA	206	55.15	d.115.1.1	72103
1ne9A	335	57.81	d.108.1.4,d.108.1.4	91839,91840
1rypK	198	59.37	d.153.1.4	41879
1rypD	241	61.53	d.153.1.4	41935
2j9iA	421	62.40		
1ryp2	233	63.05		
3by6A	126	64.40		
2h3hA	313	67.83		
2fa1A	160	69.39	d.190.1.2	133182
1rh6A	55	72.40	a.6.1.7	104935
2gfgA	193	72.80		
2c34A	116	73.03	b.1.26.1	129710
3cebA	194	74.55		
1yarH	217	74.86	d.153.1.4	122844
2oggA	152	80.03		
1rypF	233	81.63	d.153.1.4	41937
1rypH	205	81.78	d.153.1.4	41876
2zb9A	214	82.44		
2hu9A	130	86.00