# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2j6aA 141 0.4671 3bt3A 148 0.9528 2nx9A 464 1.142 1ne9A 335 1.840 d.108.1.4,d.108.1.4 91839,91840 2hf1A 68 2.426 2fn9A 290 2.513 2vhsA 217 4.877 3ctpA 330 5.280 1rypL 212 7.023 d.153.1.4 41880 1ynpA 317 7.701 1w2tA 432 8.465 b.29.1.19,b.67.2.3 120607,120608 1lqaA 346 8.926 c.1.7.1 84674 1l4dB 122 9.706 d.15.5.1 77684 3d02A 303 9.719 2boyA 254 9.860 2qu7A 288 9.99 1rypB 250 10.52 d.153.1.4 41933 1xafA 246 11.45 d.194.1.2 109535 2dnjA 260 11.77 d.151.1.1 41790 1t4bA 367 11.85 c.2.1.3,d.81.1.1 106406,106407 1rqbA 539 12.23 a.5.7.2,c.1.10.5 105057,105058 2nooA 502 12.27 2a9dA 372 12.36 b.1.18.6,d.176.1.1 126431,126432 1zsxA 347 12.64 1qxoA 388 12.96 d.258.1.1 96539 1pyfA 312 15.38 c.1.7.1 95334 1u8fO 335 15.41 c.2.1.3,d.81.1.1 119626,119627 1n9eA 787 16.33 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1yarA 233 16.95 d.153.1.4 122837 2cdcA 366 17.67 2jh3A 474 20.81 2euaA 431 20.91 d.161.1.1 132380 2etxA 209 22.44 1rypI 222 22.95 d.153.1.4 41877 1dmhA 311 23.00 b.3.6.1 22633 2ab5A 269 23.37 1vns 609 24.77 1pz1A 333 25.64 c.1.7.1 95390 1hbnC 248 27.54 d.58.31.1 60902 2bwjA 199 28.97 1g3kA 174 29.51 d.153.1.4 41989 2ek5A 129 29.91 1xgsA 295 30.06 a.4.5.25,d.127.1.1 16216,41153 1rjoA 646 31.04 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 2yx6A 121 31.12 1bywA 110 31.39 d.110.3.6 40912 1jx6A 342 32.11 c.93.1.1 67406 2nteA 210 33.45 1rypK 198 35.45 d.153.1.4 41879 1mppA 361 36.25 b.50.1.2 26856 3csyI 334 36.89 2fctA 313 38.78 b.82.2.9 133282 2c0hA 353 40.25 c.1.8.3 129594 3cebA 194 41.00 2dpmA 284 41.13 c.66.1.28 34246 2h3hA 313 41.18 1rh6A 55 42.10 a.6.1.7 104935 1o7dA 298 44.45 c.6.2.1 86641 2f57A 317 44.75 1oacA 727 44.93 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 2vglA 621 45.10 8fabB 224 46.10 b.1.1.1,b.1.1.2 19773,20883 2dqrA 122 46.21 2coiA 386 47.00 1kuxA 207 48.95 d.108.1.1 73021 1ohvA 472 49.46 c.67.1.4 93031 2in1A 175 49.64 d.20.1.4 137521 2rhmA 193 49.74 2v72A 143 50.01 2z6wA 165 50.09 2jayA 291 50.38 1sjdA 368 51.11 c.1.11.2,d.54.1.1 105632,105633 2i2cA 272 51.43 2v1xA 591 52.79 3by6A 126 53.30 1go3E 187 55.27 b.40.4.5,d.230.1.1 83054,83055 3cxkA 164 56.23 1ypvA 313 56.23 1rypC 244 56.38 d.153.1.4 41934 2bdtA 189 57.54 c.37.1.25 128344 2hu9A 130 57.60 1knqA 175 57.79 c.37.1.17 72786 1jpaA 312 58.25 d.144.1.7 67011 1fc6A 388 65.48 b.36.1.3,c.14.1.2 64738,64739 2fsxA 148 67.59 1k7jA 206 68.37 d.115.1.1 72103 1q5qA 259 69.36 d.153.1.4 95904 3cnvA 162 69.53 1ajsA 412 69.91 c.67.1.1 34276 1gegA 256 71.15 c.2.1.2 29888 2b7aA 293 72.01 1rie 129 73.33 2cghA 268 73.41 1g0uD 241 73.51 d.153.1.4 41949 2opcA 127 73.76 2fa1A 160 74.12 d.190.1.2 133182 1iruK 201 75.01 d.153.1.4 71362 1rypD 241 75.32 d.153.1.4 41935 3dmoA 138 76.52 2bonA 332 76.82 1npeA 267 77.51 b.68.5.1 92032 1ooyA 481 77.67 c.124.1.3,c.124.1.2 93388,93389 3crjA 199 78.69 2qqjA 325 80.15 1qwnA 1045 80.23 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2zb9A 214 80.60 1h8dH 260 81.55 1inp 400 82.50 2qvcA 313 82.50 2fr5A 146 84.55 c.97.1.1 133965 1esoA 154 84.81 b.1.8.1 22293 2qwtA 196 86.33 1f1uA 323 86.73 d.32.1.3,d.32.1.3 83200,83201 2p19A 149 87.28 2qorA 204 88.01 2jvuA 104 88.31 1q35A 320 88.45 c.94.1.1 95661 3cdlA 203 89.27 1xiwB 79 89.81 b.1.1.4 115368