# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	3.482		
2hf1A	68	9.928		
1tjyA	316	20.91	c.93.1.1	107062
1l4dB	122	21.00	d.15.5.1	77684
2fvyA	309	22.10	c.93.1.1	134227
2fn9A	290	26.28		
1ne9A	335	33.06	d.108.1.4,d.108.1.4	91839,91840
2gfgA	193	34.17		
1rh6A	55	38.16	a.6.1.7	104935
1h8mA	140	40.82	d.110.4.1	60782
1gca	309	40.83		
2c34A	116	51.88	b.1.26.1	129710
2j9iA	421	54.40		
2ek5A	129	54.78		
1ryp1	222	54.80		
2qb7A	397	59.55		
1o12A	376	65.14	b.92.1.5,c.1.9.10	80758,80759
2h3hA	313	66.85		
1g3kA	174	67.51	d.153.1.4	41989
2i7qA	402	67.88		
3cnvA	162	74.02		
1ryp2	233	74.26		
1xiwB	79	74.86	b.1.1.4	115368
3by6A	126	77.06		
2hu9A	130	77.74		
2zb9A	214	78.19		
1v54J	59	79.06	f.23.4.1	100331
1yarA	233	81.92	d.153.1.4	122837
1k7jA	206	85.71	d.115.1.1	72103
1rypK	198	87.87	d.153.1.4	41879
1kv0A	66	89.79	g.3.7.1	91040