# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	2.085		
1tjyA	316	10.11	c.93.1.1	107062
2hf1A	68	11.38		
2fvyA	309	19.13	c.93.1.1	134227
2fn9A	290	23.48		
1gca	309	31.66		
1h8mA	140	32.43	d.110.4.1	60782
2c34A	116	37.04	b.1.26.1	129710
2gfgA	193	39.00		
1ryp1	222	42.66		
1v54J	59	43.62	f.23.4.1	100331
1l4dB	122	44.30	d.15.5.1	77684
1ne9A	335	45.27	d.108.1.4,d.108.1.4	91839,91840
1k7jA	206	49.18	d.115.1.1	72103
2hqbA	296	51.54		
2j9iA	421	51.65		
2nteA	210	51.88		
1ryp2	233	65.70		
2hu9A	130	69.86		
2h3hA	313	70.90		
2ek5A	129	72.24		
1suwA	249	75.46	e.52.1.1	106027
2v72A	143	78.02		
2a9dA	372	78.71	b.1.18.6,d.176.1.1	126431,126432
2i7qA	402	79.85		
1xhhA	91	84.25		
1g3kA	174	85.13	d.153.1.4	41989
1g0uC	243	85.79	d.153.1.4	41948
1rh6A	55	89.83	a.6.1.7	104935