# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	2.426		
2hf1A	68	10.51		
1tjyA	316	12.28	c.93.1.1	107062
2fvyA	309	19.78	c.93.1.1	134227
1l4dB	122	22.49	d.15.5.1	77684
2fn9A	290	29.96		
1h8mA	140	30.55	d.110.4.1	60782
1gca	309	32.65		
2gfgA	193	40.02		
1ryp1	222	40.86		
2c34A	116	41.35	b.1.26.1	129710
1suwA	249	48.34	e.52.1.1	106027
1g0uC	243	50.08	d.153.1.4	41948
1ryp2	233	56.33		
2h3hA	313	60.87		
2ek5A	129	63.28		
2nteA	210	64.93		
1o12A	376	65.18	b.92.1.5,c.1.9.10	80758,80759
1k7jA	206	65.32	d.115.1.1	72103
2j9iA	421	66.07		
2hqbA	296	69.83		
2oggA	152	70.37		
2etxA	209	70.89		
2i7qA	402	72.21		
1g3kA	174	72.73	d.153.1.4	41989
1yarH	217	74.75	d.153.1.4	122844
1rh6A	55	77.30	a.6.1.7	104935
2qb7A	397	79.39		
1rypK	198	79.94	d.153.1.4	41879
1ne9A	335	81.86	d.108.1.4,d.108.1.4	91839,91840
2qu7A	288	82.71		
1yarA	233	82.93	d.153.1.4	122837
1v54J	59	89.92	f.23.4.1	100331