# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2j6aA	141	6.982		
2fvyA	309	8.652	c.93.1.1	134227
2hf1A	68	9.020		
1tjyA	316	18.57	c.93.1.1	107062
1h8mA	140	25.01	d.110.4.1	60782
2etxA	209	26.36		
2nteA	210	29.52		
2fn9A	290	32.59		
2rjoA	332	35.49		
1xw8A	252	39.66	c.6.2.5	116111
1gca	309	40.40		
1rh6A	55	41.06	a.6.1.7	104935
2fqxA	318	44.19		
1l0bA	229	44.55	c.15.1.3,c.15.1.3	73391,73392
2iy2A	72	44.90		
1g0uC	243	52.24	d.153.1.4	41948
2p19A	149	55.20		
1v6tA	255	56.92	c.6.2.5	113550
2hqbA	296	60.38		
1go3E	187	61.34	b.40.4.5,d.230.1.1	83054,83055
1l4dB	122	62.67	d.15.5.1	77684
1ryp1	222	64.91		
1jovA	270	67.45	b.30.5.7	84192
2qu7A	288	70.27		
2co5A	99	70.70		
2ab5A	269	71.22		
1u1sA	82	76.37	b.38.1.2	119451
2oggA	152	79.02		
2it1A	362	79.93		
2h3hA	313	80.48		
2dfaA	250	84.67	c.6.2.5	131469
3bk5A	237	87.02		
2couA	109	88.04		
2dri	271	89.25