# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	5.327		
3bdwB	120	13.10		
1xeeA	91	15.83		
2msbA	115	18.27	d.169.1.1	42355
1vm7A	311	20.61	c.72.1.1	108884
2inpL	89	25.69		
1si2A	149	29.12	b.34.14.1	105569
1dm9A	133	31.17	d.66.1.3	39560
1lugA	259	32.58	b.74.1.1	91127
2v0hA	456	33.78		
2j6aA	141	36.22		
1g60A	260	38.46	c.66.1.11	70151
1fljA	260	39.61	b.74.1.1	27954
1p65A	73	43.45	d.254.1.1	94156
1rkdA	309	45.58	c.72.1.1	34928
2freA	200	48.15	d.90.1.1	133985
1vk3A	615	48.76	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
1yreA	197	49.80	d.108.1.1	123919
1tbxA	99	50.03	a.4.5.48	106748
1t3yA	141	52.66	d.109.1.2	119141
2nmxA	260	54.05	b.74.1.1	138382
2cx7A	130	55.01		
1azo	232	55.45		
1sl4A	155	57.67	d.169.1.1	105710
2hqxA	246	58.25	b.34.9.1	136675
2h2tB	175	58.42		
2hs3A	603	58.58	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
2boyA	254	59.86		
1rkd	309	61.68		
1h7eA	245	63.08	c.68.1.13	60717
2pbyA	308	63.31		
1xszA	356	63.58	a.118.3.1,d.129.9.1	116005,116006
2fv7A	331	64.13	c.72.1.1	134197
2axtC	473	65.88		
1w2lA	99	66.94		
1nwpA	128	66.97	b.6.1.1	23011
1rdo1	113	68.70		
2rbbA	141	70.10		
3bqxA	150	74.09		
2ohwA	133	75.22		
1iqzA	81	77.48	d.58.1.4	66281
2pw9A	268	77.86		
1pz4A	116	80.15	d.106.1.1	95400
2p38A	166	81.06		
1keqA	248	81.36	b.74.1.1	72387
1b93A	152	85.01	c.24.1.2	31507
2i7hA	189	85.57		
2pebA	122	86.89		
2fphX	165	87.86		
2g5xA	234	88.68		
2cy2A	174	89.01	d.108.1.1	131016