# List of top-scoring protein chains for TR464.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jnyA	67	0.06998		
2pk7A	69	0.3457		
2hf1A	68	2.471		
2js4A	70	3.160		
2jwyA	168	13.22		
2a2lA	145	16.22	d.110.9.1	126035
1zhiB	138	27.31	d.339.1.1	125097
1z1aA	142	27.39	d.339.1.1	124344
2go2A	163	27.60		
1zbxB	140	32.63	d.339.1.1	124877
2jr6A	68	34.65		
1v6tA	255	43.38	c.6.2.5	113550
4gpd1	333	47.87		
2pnfA	248	48.69		
2q24A	194	53.23		
2curA	69	55.18	g.39.1.3,g.39.1.3	130820,130821
2fkdA	110	69.33		
1v54J	59	69.88	f.23.4.1	100331
1iruJ	205	78.22	d.153.1.4	71361
2dykA	161	87.93		
2ensA	96	88.17