# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	2.089		
2j6aA	141	9.451		
1gl4A	285	17.34	d.22.1.2,g.3.11.5	65286,65287
1suwA	249	18.86	e.52.1.1	106027
2hhiA	204	23.99		
2fa1A	160	24.56	d.190.1.2	133182
2occJ	59	24.94	f.23.4.1	43524
1k7jA	206	26.18	d.115.1.1	72103
1v54J	59	28.02	f.23.4.1	100331
1ltqA	301	28.50	c.108.1.9,c.37.1.1	78208,78209
1gca	309	31.00		
1rypK	198	35.77	d.153.1.4	41879
1rypI	222	38.28	d.153.1.4	41877
3cygA	222	41.55		
3cebA	194	52.13		
2ywlA	180	54.44		
3bt3A	148	57.80		
1gudA	288	63.05	c.93.1.1	83326
1z0sA	278	63.65	e.52.1.1	124328
2adoA	196	65.29		
1rypL	212	71.43	d.153.1.4	41880
1gveA	327	72.89	c.1.7.1	70597
1hw6A	278	73.94	c.1.7.1	61296
8abp	306	86.20		
1frb	315	89.71