# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	1.992		
1suwA	249	7.428	e.52.1.1	106027
2j6aA	141	8.239		
2couA	109	15.50		
1k7jA	206	18.67	d.115.1.1	72103
1ltqA	301	23.11	c.108.1.9,c.37.1.1	78208,78209
1gl4A	285	25.20	d.22.1.2,g.3.11.5	65286,65287
1z0sA	278	25.24	e.52.1.1	124328
2hhiA	204	26.47		
2fa1A	160	28.75	d.190.1.2	133182
1v54J	59	34.02	f.23.4.1	100331
3cebA	194	35.18		
2occJ	59	35.71	f.23.4.1	43524
3cygA	222	38.76		
1rypK	198	43.79	d.153.1.4	41879
1rypI	222	48.48	d.153.1.4	41877
1gudA	288	49.77	c.93.1.1	83326
1gca	309	55.97		
1wdjA	187	65.12	c.52.1.27	114536
1rypL	212	66.51	d.153.1.4	41880
2d3yA	219	79.37		
1rypH	205	79.88	d.153.1.4	41876
3bk5A	237	80.32		
8abp	306	85.80		
1ryp2	233	88.60		
1xovA	326	89.36	b.34.11.4,c.56.5.6	122206,122207