# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.2295		
2j6aA	141	1.672		
2hhiA	204	4.395		
1k7jA	206	4.859	d.115.1.1	72103
1suwA	249	5.176	e.52.1.1	106027
1gl4A	285	9.729	d.22.1.2,g.3.11.5	65286,65287
2fa1A	160	12.70	d.190.1.2	133182
1rfsA	139	15.69	b.33.1.1	24434
1bywA	110	17.75	d.110.3.6	40912
2couA	109	22.50		
1rh6A	55	22.68	a.6.1.7	104935
1z0sA	278	22.90	e.52.1.1	124328
1rfs	139	25.35		
1v6tA	255	27.89	c.6.2.5	113550
1xw8A	252	31.04	c.6.2.5	116111
1v54J	59	32.76	f.23.4.1	100331
1gca	309	33.19		
2occJ	59	34.39	f.23.4.1	43524
2nteA	210	39.97		
2qtdA	105	40.89		
1ywyA	74	43.49	b.55.2.1	124166
1a1aA	107	46.58	d.93.1.1	40449
8abp	306	53.40		
1lla	628	56.45		
2h7jA	220	57.63	d.3.1.1	136216
2djfB	164	57.96		
1rypK	198	59.46	d.153.1.4	41879
1gudA	288	60.48	c.93.1.1	83326
2o39C	126	61.09	g.18.1.1,g.18.1.1	138898,138899
2p19A	149	61.20		
1u2hA	99	61.66		
1tjyA	316	63.34	c.93.1.1	107062
1ltqA	301	63.92	c.108.1.9,c.37.1.1	78208,78209
2d3yA	219	64.94		
1gveA	327	65.71	c.1.7.1	70597
1t8qA	336	66.17	c.1.18.3	106669
3bk5A	237	69.30		
2hu9A	130	71.81		
3cebA	194	74.30		
2de6D	115	75.73		
2dfaA	250	76.97	c.6.2.5	131469
1r8oB	71	77.11		
2e74D	179	77.49	b.33.1.1,f.23.12.1	132049,132050
1exbA	332	77.53	c.1.7.1	28666
2ooiA	162	77.69		
3d89A	157	80.23		
1sgvA	316	80.45	b.122.1.1,d.265.1.2	98858,98859
1c4kA	730	80.79	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
1f9rA	70	82.62	d.9.1.1	90484
2dri	271	86.42		
1hw6A	278	89.29	c.1.7.1	61296