# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	1.298		
2j6aA	141	4.433		
1suwA	249	10.55	e.52.1.1	106027
1k7jA	206	16.77	d.115.1.1	72103
2occJ	59	21.83	f.23.4.1	43524
1v54J	59	25.98	f.23.4.1	100331
1gca	309	30.16		
1ltqA	301	33.25	c.108.1.9,c.37.1.1	78208,78209
2hhiA	204	38.37		
1z0sA	278	39.67	e.52.1.1	124328
1wdjA	187	44.56	c.52.1.27	114536
1gl4A	285	44.65	d.22.1.2,g.3.11.5	65286,65287
2couA	109	44.72		
2fa1A	160	45.35	d.190.1.2	133182
3cygA	222	46.19		
1rh6A	55	51.52	a.6.1.7	104935
1rypI	222	54.88	d.153.1.4	41877
1rypK	198	55.84	d.153.1.4	41879
1rypL	212	57.63	d.153.1.4	41880
3cebA	194	58.64		
1xovA	326	60.36	b.34.11.4,c.56.5.6	122206,122207
2dri	271	61.48		
1gudA	288	63.28	c.93.1.1	83326
1jx6A	342	64.86	c.93.1.1	67406
2adoA	196	64.88		
1hw6A	278	69.38	c.1.7.1	61296
8abp	306	71.98		
1bywA	110	76.22	d.110.3.6	40912
2fvyA	309	77.37	c.93.1.1	134227
1ryp2	233	79.98		
1iruK	201	84.07	d.153.1.4	71362
1ur3M	319	88.35	c.1.7.1	99806