# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	1.796		
2j6aA	141	12.49		
1suwA	249	16.52	e.52.1.1	106027
2occJ	59	21.89	f.23.4.1	43524
1k7jA	206	28.04	d.115.1.1	72103
1gca	309	28.58		
1v54J	59	29.04	f.23.4.1	100331
1ltqA	301	29.15	c.108.1.9,c.37.1.1	78208,78209
2hhiA	204	37.28		
1gl4A	285	38.31	d.22.1.2,g.3.11.5	65286,65287
2couA	109	39.57		
1wdjA	187	40.97	c.52.1.27	114536
2fa1A	160	44.96	d.190.1.2	133182
3cygA	222	46.85		
8abp	306	53.94		
2dri	271	58.46		
1rypK	198	59.65	d.153.1.4	41879
1hw6A	278	60.53	c.1.7.1	61296
1z0sA	278	60.58	e.52.1.1	124328
1jx6A	342	61.80	c.93.1.1	67406
1gudA	288	62.15	c.93.1.1	83326
1rh6A	55	62.89	a.6.1.7	104935
2adoA	196	65.64		
1frb	315	66.06		
2hejA	323	69.16		
3cebA	194	70.56		
1rypI	222	72.78	d.153.1.4	41877
1xovA	326	72.86	b.34.11.4,c.56.5.6	122206,122207
1ur3M	319	74.88	c.1.7.1	99806
2fvyA	309	84.26	c.93.1.1	134227
1rypL	212	85.84	d.153.1.4	41880
2h0aA	276	87.52