# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	1.716		
2j6aA	141	8.620		
1suwA	249	11.84	e.52.1.1	106027
2occJ	59	17.14	f.23.4.1	43524
1v54J	59	21.78	f.23.4.1	100331
1k7jA	206	22.54	d.115.1.1	72103
1wdjA	187	30.88	c.52.1.27	114536
1gca	309	31.24		
2fa1A	160	32.46	d.190.1.2	133182
1gl4A	285	33.08	d.22.1.2,g.3.11.5	65286,65287
1ltqA	301	38.07	c.108.1.9,c.37.1.1	78208,78209
1gudA	288	42.62	c.93.1.1	83326
1z0sA	278	43.57	e.52.1.1	124328
2hhiA	204	44.12		
3cygA	222	44.91		
1rypK	198	51.51	d.153.1.4	41879
1jx6A	342	51.56	c.93.1.1	67406
8abp	306	52.59		
1rh6A	55	54.22	a.6.1.7	104935
2couA	109	54.39		
2adoA	196	55.60		
3cebA	194	55.92		
1rypI	222	56.16	d.153.1.4	41877
1xovA	326	56.72	b.34.11.4,c.56.5.6	122206,122207
2dri	271	59.96		
2h0aA	276	65.86		
1txoA	237	78.71	d.219.1.1	112781
1rypL	212	80.47	d.153.1.4	41880
2fvyA	309	82.09	c.93.1.1	134227
2fqxA	318	88.97