# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	1.905		
2occJ	59	14.87	f.23.4.1	43524
1zroA	602	17.81	a.264.1.1,a.264.1.1	125551,125552
1v54J	59	18.54	f.23.4.1	100331
1gudA	288	24.27	c.93.1.1	83326
2hhiA	204	27.60		
1i4wA	353	28.20	c.66.1.24	66028
1bywA	110	28.68	d.110.3.6	40912
1wdjA	187	30.65	c.52.1.27	114536
1suwA	249	32.88	e.52.1.1	106027
1ltqA	301	43.66	c.108.1.9,c.37.1.1	78208,78209
1gveA	327	43.86	c.1.7.1	70597
2rjoA	332	47.01		
2p19A	149	48.53		
2gviA	204	51.91		
3bqkA	360	53.41		
1otjA	283	54.45	b.82.2.5	93517
1v6tA	255	58.47	c.6.2.5	113550
2prbA	196	60.96		
1hw6A	278	64.23	c.1.7.1	61296
1xh9A	350	68.18		
1pyfA	312	70.55	c.1.7.1	95334
1rh6A	55	72.85	a.6.1.7	104935
2fa1A	160	74.43	d.190.1.2	133182
2ho3A	325	76.37		
2d3yA	219	76.97		
2ivyA	101	77.64		
1exbA	332	80.19	c.1.7.1	28666
1zsxA	347	86.78