# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	1.960		
2j6aA	141	15.64		
1k7jA	206	15.86	d.115.1.1	72103
2fa1A	160	19.63	d.190.1.2	133182
1suwA	249	22.62	e.52.1.1	106027
2occJ	59	23.34	f.23.4.1	43524
1v54J	59	29.92	f.23.4.1	100331
2hhiA	204	33.74		
1gl4A	285	34.56	d.22.1.2,g.3.11.5	65286,65287
1gca	309	34.82		
3cebA	194	42.26		
1ltqA	301	43.95	c.108.1.9,c.37.1.1	78208,78209
1rh6A	55	48.43	a.6.1.7	104935
1rypI	222	62.07	d.153.1.4	41877
1rypK	198	66.96	d.153.1.4	41879
1rypH	205	73.00	d.153.1.4	41876
1rypF	233	74.22	d.153.1.4	41937
1w2tA	432	74.46	b.29.1.19,b.67.2.3	120607,120608
1xovA	326	77.15	b.34.11.4,c.56.5.6	122206,122207
2couA	109	78.53		
1hw6A	278	79.33	c.1.7.1	61296
2adoA	196	79.68		
2p19A	149	82.46		
1bywA	110	82.55	d.110.3.6	40912
1z0sA	278	83.25	e.52.1.1	124328
1wdjA	187	88.91	c.52.1.27	114536