# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hf1A 68 0.9552 3bt3A 148 1.118 1ynpA 317 1.256 2e27H 126 4.389 2fa1A 160 4.551 d.190.1.2 133182 2nx9A 464 4.665 1brmA 367 5.058 c.2.1.3,d.81.1.1 30030,39945 2j6aA 141 5.095 1xafA 246 5.451 d.194.1.2 109535 1fcdA 401 5.665 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1vqqA 646 6.414 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 1rypI 222 7.205 d.153.1.4 41877 2e7uA 424 7.788 1lqaA 346 7.828 c.1.7.1 84674 1rypL 212 10.05 d.153.1.4 41880 1qxoA 388 10.10 d.258.1.1 96539 1rypB 250 10.40 d.153.1.4 41933 1jx6A 342 11.43 c.93.1.1 67406 1zsxA 347 12.43 4mbp 370 12.84 2p8eA 307 14.42 1k7jA 206 14.77 d.115.1.1 72103 1htyA 1015 15.73 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1xhbA 472 16.82 b.42.2.1,c.68.1.17 115290,115291 1pyfA 312 16.94 c.1.7.1 95334 1n9eA 787 16.97 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 3cebA 194 18.10 1w2tA 432 18.47 b.29.1.19,b.67.2.3 120607,120608 1zglP 249 19.51 b.1.1.1,b.1.1.2 125047,125048 1rdr 461 19.59 1ef1A 294 20.84 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1yf3A 259 22.09 c.66.1.28 123046 1rqbA 539 22.60 a.5.7.2,c.1.10.5 105057,105058 2epjA 434 22.77 1u8fO 335 23.37 c.2.1.3,d.81.1.1 119626,119627 1qwnA 1045 24.40 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 3c5rA 137 25.96 1t4bA 367 27.31 c.2.1.3,d.81.1.1 106406,106407 2cy8A 453 28.03 2jabA 136 28.17 2yx6A 121 28.49 2gsaA 432 29.22 c.67.1.4 34446 3csyI 334 29.62 1xgsA 295 30.33 a.4.5.25,d.127.1.1 16216,41153 1xfiA 367 30.53 e.50.1.1 109584 1k8tA 510 30.62 e.41.1.1 68316 2c0hA 353 31.72 c.1.8.3 129594 1rypK 198 32.05 d.153.1.4 41879 2qwtA 196 33.11 1vns 609 33.60 1bywA 110 33.87 d.110.3.6 40912 1bd8A 156 34.19 d.211.1.1 19157 1xknA 355 39.46 d.126.1.6 115414 1kbjA 412 40.80 c.1.4.1 72280 2yr1A 257 41.52 2cmtA 172 42.85 1yarA 233 43.28 d.153.1.4 122837 1rieA 129 43.73 b.33.1.1 24427 1o7dA 298 44.87 c.6.2.1 86641 1rh6A 55 45.40 a.6.1.7 104935 1ne9A 335 45.78 d.108.1.4,d.108.1.4 91839,91840 8abp 306 45.80 3ctpA 330 46.13 1rypC 244 46.48 d.153.1.4 41934 2qtdA 105 46.49 2boyA 254 47.57 1qo8A 566 48.25 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2h0aA 276 48.68 2c0cA 362 48.90 2occJ 59 49.89 f.23.4.1 43524 1pz1A 333 50.00 c.1.7.1 95390 2dqrA 122 50.53 2euaA 431 52.59 d.161.1.1 132380 1ur3M 319 53.12 c.1.7.1 99806 3bq5A 766 53.55 1tf5A 844 54.65 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1v54J 59 55.37 f.23.4.1 100331 3dmoA 138 55.93 1eejA 216 55.98 c.47.1.9,d.17.3.1 33057,38071 2in1A 175 57.58 d.20.1.4 137521 2djkA 133 57.69 c.47.1.2 131548 2cvzA 289 59.40 a.100.1.1,c.2.1.6 130890,130891 1mi4A 427 59.51 d.68.2.2 79141 1sffA 426 60.03 c.67.1.4 105482 1f1xA 322 64.20 d.32.1.3,d.32.1.3 83208,83209 2hcyA 347 64.65 1dgfA 497 64.88 e.5.1.1 42782 3cdlA 203 65.01 1eo9A 209 65.42 b.3.6.1 22731 1l4dB 122 66.37 d.15.5.1 77684 3c0wA 235 66.92 1gudA 288 67.20 c.93.1.1 83326 1hw6A 278 67.28 c.1.7.1 61296 1iruK 201 69.14 d.153.1.4 71362 2p19A 149 69.58 1tqyA 424 70.68 c.95.1.1,c.95.1.1 107245,107246 2nooA 502 71.03 1f1uA 323 71.93 d.32.1.3,d.32.1.3 83200,83201 2a6sA 84 72.35 d.298.1.1 126305 1ohvA 472 72.50 c.67.1.4 93031 2a9dA 372 73.62 b.1.18.6,d.176.1.1 126431,126432 1ypvA 313 73.69 2fr5A 146 74.06 c.97.1.1 133965 1a88A 275 74.44 c.69.1.12 34707 2avwA 311 76.18 3by6A 126 76.41 1xw8A 252 77.60 c.6.2.5 116111 2j58A 359 77.78 1dssG 333 78.23 c.2.1.3,d.81.1.1 30022,39937 2nteA 210 78.24 1gveA 327 78.33 c.1.7.1 70597 1jpzA 473 78.37 a.104.1.1 67069 1v04A 355 78.55 b.68.6.2 100240 2gnpA 266 79.49 2jaeA 489 80.81 1rypH 205 80.81 d.153.1.4 41876 2couA 109 81.24 2rfmA 192 82.15 1yrrA 382 82.55 b.92.1.5,c.1.9.10 123935,123936 1rie 129 82.72 1w63A 618 83.23 i.23.1.1 109192 1af7A 274 83.35 a.58.1.1,c.66.1.8 17928,34203 1rxwA 336 85.70 a.60.7.1,c.120.1.2 98059,98060 2qgmA 445 86.81 1u1wA 298 87.50 d.21.1.2,d.21.1.2 112957,112958 2i7aA 174 88.76