# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	2.241		
1suwA	249	16.25	e.52.1.1	106027
2hhiA	204	21.81		
1k7jA	206	22.31	d.115.1.1	72103
2fa1A	160	23.15	d.190.1.2	133182
2j6aA	141	24.68		
2occJ	59	28.20	f.23.4.1	43524
1gl4A	285	32.08	d.22.1.2,g.3.11.5	65286,65287
1v54J	59	32.09	f.23.4.1	100331
1rh6A	55	32.71	a.6.1.7	104935
1ltqA	301	35.30	c.108.1.9,c.37.1.1	78208,78209
3cebA	194	54.93		
1gca	309	58.86		
1z0sA	278	59.12	e.52.1.1	124328
1rypK	198	67.37	d.153.1.4	41879
1rypI	222	69.00	d.153.1.4	41877
1w2tA	432	78.38	b.29.1.19,b.67.2.3	120607,120608
2ywlA	180	81.73		
1xovA	326	82.88	b.34.11.4,c.56.5.6	122206,122207
2couA	109	86.82