# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	3.274		
1suwA	249	8.512	e.52.1.1	106027
2couA	109	12.03		
1k7jA	206	13.43	d.115.1.1	72103
2fa1A	160	17.60	d.190.1.2	133182
2occJ	59	17.93	f.23.4.1	43524
1v54J	59	19.09	f.23.4.1	100331
1ltqA	301	19.44	c.108.1.9,c.37.1.1	78208,78209
2j6aA	141	22.83		
1rypK	198	25.58	d.153.1.4	41879
2hhiA	204	26.00		
1gl4A	285	30.34	d.22.1.2,g.3.11.5	65286,65287
1z0sA	278	32.39	e.52.1.1	124328
1gudA	288	35.85	c.93.1.1	83326
1rypI	222	36.22	d.153.1.4	41877
1wdjA	187	41.22	c.52.1.27	114536
1gca	309	43.08		
1rypH	205	47.84	d.153.1.4	41876
1ryp2	233	55.58		
3cygA	222	58.21		
3cebA	194	60.04		
1rh6A	55	65.78	a.6.1.7	104935
1rypL	212	66.22	d.153.1.4	41880
1iruK	201	70.82	d.153.1.4	71362
2co5A	99	71.13		
1g0uC	243	81.27	d.153.1.4	41948
8abp	306	83.22		
3bzmA	431	84.36		
2fn0A	437	86.09	d.161.1.1	133799
2fqxA	318	88.41