# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	2.122		
1k7jA	206	9.506	d.115.1.1	72103
1suwA	249	12.35	e.52.1.1	106027
2j6aA	141	13.05		
2occJ	59	16.27	f.23.4.1	43524
1v54J	59	17.44	f.23.4.1	100331
2hhiA	204	17.70		
2fa1A	160	18.24	d.190.1.2	133182
1ltqA	301	21.48	c.108.1.9,c.37.1.1	78208,78209
1gl4A	285	23.04	d.22.1.2,g.3.11.5	65286,65287
1gca	309	29.49		
2couA	109	41.30		
1gudA	288	42.21	c.93.1.1	83326
8abp	306	45.23		
2dri	271	54.39		
1rh6A	55	62.82	a.6.1.7	104935
1rypI	222	63.93	d.153.1.4	41877
1rypK	198	66.05	d.153.1.4	41879
1z0sA	278	67.83	e.52.1.1	124328
3cygA	222	71.67		
1wdjA	187	71.79	c.52.1.27	114536
1tjyA	316	75.20	c.93.1.1	107062
1jx6A	342	75.39	c.93.1.1	67406
1ur3M	319	77.54	c.1.7.1	99806
2fvyA	309	77.91	c.93.1.1	134227
1lla	628	83.21		
1frb	315	84.31		
1ryp2	233	85.41		
2fqxA	318	85.68