# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	3.306		
1suwA	249	5.432	e.52.1.1	106027
2j6aA	141	12.20		
1k7jA	206	13.90	d.115.1.1	72103
2occJ	59	19.35	f.23.4.1	43524
2hhiA	204	20.14		
1gl4A	285	21.44	d.22.1.2,g.3.11.5	65286,65287
1z0sA	278	22.47	e.52.1.1	124328
1v54J	59	23.46	f.23.4.1	100331
2couA	109	23.99		
1rypI	222	30.82	d.153.1.4	41877
2fa1A	160	33.70	d.190.1.2	133182
1rypK	198	38.91	d.153.1.4	41879
3cygA	222	41.99		
1ltqA	301	43.07	c.108.1.9,c.37.1.1	78208,78209
1gca	309	45.75		
1gudA	288	47.02	c.93.1.1	83326
1rypH	205	47.64	d.153.1.4	41876
1wdjA	187	53.49	c.52.1.27	114536
3cebA	194	54.72		
1ryp2	233	65.89		
2fqxA	318	69.02		
1rh6A	55	71.63	a.6.1.7	104935
2adoA	196	75.72		
1gg3A	279	77.27	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615
1iruK	201	79.71	d.153.1.4	71362
1rypL	212	80.58	d.153.1.4	41880
1pzwA	80	88.69	g.39.1.10	95483