# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2iy2A	72	7.638		
1w2tA	432	10.10	b.29.1.19,b.67.2.3	120607,120608
2occJ	59	19.35	f.23.4.1	43524
2couA	109	19.79		
1xh9A	350	20.20		
1v54J	59	23.53	f.23.4.1	100331
2hf1A	68	23.63		
1v6tA	255	26.62	c.6.2.5	113550
1xw8A	252	32.01	c.6.2.5	116111
1k7jA	206	34.95	d.115.1.1	72103
2d5rB	116	36.77		
1omwA	689	44.09	a.91.1.1,b.55.1.1,d.144.1.7	87086,87087,87088
3pcgA	200	51.30	b.3.6.1	22647
2fa1A	160	51.65	d.190.1.2	133182
1wdjA	187	54.50	c.52.1.27	114536
1lla	628	63.53		
2p19A	149	68.02		
2hhiA	204	71.12		
1bywA	110	73.82	d.110.3.6	40912
2pdrA	149	76.44		
2dfaA	250	80.04	c.6.2.5	131469