# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	7.036		
1v6tA	255	16.77	c.6.2.5	113550
2nteA	210	21.40		
2hhiA	204	23.73		
1gudA	288	38.21	c.93.1.1	83326
2couA	109	47.14		
2dfaA	250	47.67	c.6.2.5	131469
1xw8A	252	51.95	c.6.2.5	116111
2iy2A	72	59.60		
1suwA	249	63.75	e.52.1.1	106027
2fqxA	318	67.13		
1xafA	246	72.87	d.194.1.2	109535
1zvnA	99	79.04		
1w2tA	432	80.05	b.29.1.19,b.67.2.3	120607,120608
2igtA	332	82.39	c.66.1.51	137401
3pcgA	200	88.51	b.3.6.1	22647
1wdjA	187	88.69	c.52.1.27	114536