# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	3.767		
1zs7A	190	5.708	b.122.1.1,d.17.6.4	125593,125594
2cx1A	187	6.481	b.122.1.1,d.17.6.4	130967,130968
1gqpA	221	7.403	b.18.1.9	70372
1r94A	118	10.72	b.124.1.1	97251
1qniA	581	13.99	b.6.1.4,b.69.3.1	23042,27642
1s98A	107	14.19	b.124.1.1	105377
2j6aA	141	14.50		
1w2lA	99	21.50		
2msbA	115	23.67	d.169.1.1	42355
2rbbA	141	23.84		
1khvA	516	24.66	e.8.1.4	68627
3bdwB	120	25.80		
1lc0A	294	26.75	c.2.1.3,d.81.1.4	73823,73824
1qo3C	137	26.97	d.169.1.1	42350
1bywA	110	27.19	d.110.3.6	40912
2v0hA	456	31.07		
1iqzA	81	34.21	d.58.1.4	66281
2h2tB	175	35.13		
2g0qA	173	35.76		
2qsxA	218	40.21		
1y0nA	78	41.98	d.291.1.1	116305
1g97A	459	42.31	b.81.1.4,c.68.1.5	60394,60395
1j71A	334	42.84	b.50.1.2	62669
1q7hA	153	43.39	b.122.1.1,d.17.6.2	96042,96043
1fwxA	595	44.30	b.6.1.4,b.69.3.1	60069,60070
1xb4A	202	44.98	a.4.5.54,a.4.5.54	121832,121833
1rdo1	113	46.22		
1yreA	197	48.98	d.108.1.1	123919
1si2A	149	51.38	b.34.14.1	105569
1azoA	232	51.61	c.52.1.14	33329
1lkdA	297	53.39	d.32.1.3,d.32.1.3	78059,78060
1nwpA	128	53.76	b.6.1.1	23011
1t3yA	141	53.90	d.109.1.2	119141
2g5xA	234	57.27		
1ass	159	58.03		
1tvgA	153	59.52	b.18.1.9	112683
2v78A	313	61.07		
2freA	200	61.49	d.90.1.1	133985
1pyoB	105	62.09		
2iwkA	642	63.34		
1rtm1	149	63.49		
2fcoA	200	65.32		
1han	297	67.15		
1qf8A	182	70.23	g.41.4.1	45212
1p0yA	444	70.35	a.166.1.1,b.85.7.3	87654,87655
1k9jA	139	75.97	d.169.1.1	68353
1i4wA	353	76.22	c.66.1.24	66028
2v0cA	878	77.58		
1x4rA	99	77.84		
1assA	159	78.37	c.8.5.2	30818
2gj3A	120	78.38		
2ho3A	325	79.78		
2inpL	89	80.38		
2ccwA	129	81.06	b.6.1.1	130259
2ohwA	133	83.15		
2aprA	325	83.34	b.50.1.2	26819
2c6uA	122	84.23		
1wijA	140	86.21	a.140.5.1	114674
2z0tA	109	87.75		
1hv9A	456	87.90	b.81.1.4,c.68.1.5	28060,34518
2q0lA	311	88.46		
2pdrA	149	88.48		
1te7A	103	89.09	b.122.1.7	112404