PFRMAT RR TARGET TR464 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa7str2_7near3nsep5.47.data03.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 18 MODEL 1 LSLLESKGLEALNKAIASGTVQRADGSIQNQSLHEALITRDRKQVFRIED SIPVLLPEEAIATIQIANF 21 30 0 8 0.665024 21 32 0 8 0.694096 21 33 0 8 0.73258 21 36 0 8 0.418542 21 38 0 8 0.737795 21 39 0 8 0.559975 21 40 0 8 0.663135 21 41 0 8 0.758575 21 42 0 8 0.518043 21 45 0 8 0.578854 21 46 0 8 0.527917 21 47 0 8 0.490025 21 48 0 8 0.45221 21 50 0 8 0.620957 21 51 0 8 0.462783 21 52 0 8 0.644299 21 53 0 8 0.639504 21 54 0 8 0.702002 21 55 0 8 0.698878 21 56 0 8 0.457661 21 59 0 8 0.409132 21 62 0 8 0.585046 21 63 0 8 0.515995 21 65 0 8 0.594121 21 67 0 8 0.4586 21 69 0 8 0.495382 21 70 0 8 0.443585 21 71 0 8 0.667193 21 72 0 8 0.547429 21 73 0 8 0.527022 21 75 0 8 0.504823 21 77 0 8 0.578258 21 78 0 8 0.527338 21 80 0 8 0.494925 21 81 0 8 0.517687 21 83 0 8 0.601854 22 38 0 8 0.413688 22 40 0 8 0.505525 22 41 0 8 0.505415 22 45 0 8 0.437543 22 50 0 8 0.432549 23 32 0 8 0.455125 23 38 0 8 0.428575 23 40 0 8 0.423234 23 41 0 8 0.448052 23 50 0 8 0.434923 23 52 0 8 0.423145 26 35 0 8 0.419369 26 36 0 8 0.452509 26 38 0 8 0.789881 26 39 0 8 0.477267 26 40 0 8 0.629885 26 41 0 8 0.761097 26 42 0 8 0.440063 26 45 0 8 0.58405 26 46 0 8 0.458967 26 47 0 8 0.410279 26 48 0 8 0.41551 26 50 0 8 0.691531 26 52 0 8 0.689955 26 53 0 8 0.645454 26 54 0 8 0.702314 26 55 0 8 0.711339 26 56 0 8 0.440886 26 62 0 8 0.634972 26 63 0 8 0.509201 26 65 0 8 0.656526 26 67 0 8 0.412901 26 69 0 8 0.467517 26 71 0 8 0.67586 26 72 0 8 0.516757 26 73 0 8 0.532251 26 75 0 8 0.533026 26 77 0 8 0.613119 26 78 0 8 0.555287 26 80 0 8 0.516671 26 81 0 8 0.540195 26 83 0 8 0.615955 27 38 0 8 0.443348 27 40 0 8 0.447312 27 41 0 8 0.464191 27 45 0 8 0.413244 27 50 0 8 0.447544 28 38 0 8 0.476951 28 41 0 8 0.462625 28 50 0 8 0.439046 29 38 0 8 0.839304 29 39 0 8 0.439444 29 40 0 8 0.594034 29 41 0 8 0.78793 29 45 0 8 0.53341 29 50 0 8 0.69822 29 52 0 8 0.69398 29 53 0 8 0.692807 29 54 0 8 0.776837 29 55 0 8 0.79398 29 62 0 8 0.690914 29 63 0 8 0.521818 29 65 0 8 0.620828 29 69 0 8 0.515896 29 71 0 8 0.745015 29 72 0 8 0.63056 29 73 0 8 0.582365 29 75 0 8 0.506333 29 77 0 8 0.644603 29 78 0 8 0.631173 29 80 0 8 0.49875 29 81 0 8 0.551576 29 83 0 8 0.654602 30 39 0 8 0.578652 30 40 0 8 0.737833 30 41 0 8 0.818397 30 42 0 8 0.528728 30 45 0 8 0.687363 30 46 0 8 0.546641 30 47 0 8 0.520143 30 48 0 8 0.532642 30 50 0 8 0.790781 30 51 0 8 0.45773 30 52 0 8 0.764817 30 53 0 8 0.687172 30 54 0 8 0.718485 30 55 0 8 0.739964 30 56 0 8 0.527661 30 57 0 8 0.412357 30 58 0 8 0.421039 30 59 0 8 0.485232 30 62 0 8 0.667363 30 63 0 8 0.54782 30 65 0 8 0.716766 30 67 0 8 0.485974 30 69 0 8 0.507751 30 70 0 8 0.412504 30 71 0 8 0.660764 30 72 0 8 0.492967 30 73 0 8 0.521789 30 75 0 8 0.585308 30 77 0 8 0.647301 30 78 0 8 0.576171 30 80 0 8 0.57822 30 81 0 8 0.603736 30 82 0 8 0.425992 30 83 0 8 0.688044 32 41 0 8 0.561073 32 45 0 8 0.419607 32 50 0 8 0.520584 32 52 0 8 0.485324 32 53 0 8 0.415257 32 54 0 8 0.437622 32 55 0 8 0.446985 32 65 0 8 0.491461 32 71 0 8 0.435104 32 83 0 8 0.437908 33 42 0 8 0.510886 33 45 0 8 0.663325 33 46 0 8 0.514812 33 47 0 8 0.450477 33 48 0 8 0.465471 33 50 0 8 0.781971 33 51 0 8 0.437685 33 52 0 8 0.768258 33 53 0 8 0.737779 33 54 0 8 0.799268 33 55 0 8 0.821418 33 56 0 8 0.525836 33 62 0 8 0.680474 33 63 0 8 0.578213 33 65 0 8 0.698436 33 69 0 8 0.53476 33 70 0 8 0.41562 33 71 0 8 0.727054 33 72 0 8 0.558649 33 73 0 8 0.53396 33 75 0 8 0.545786 33 77 0 8 0.626523 33 78 0 8 0.578436 33 80 0 8 0.509191 33 81 0 8 0.560789 33 83 0 8 0.675684 34 43 0 8 0.430921 34 45 0 8 0.598612 34 46 0 8 0.49129 34 47 0 8 0.495301 34 48 0 8 0.489213 34 50 0 8 0.640365 34 52 0 8 0.584101 34 53 0 8 0.492213 34 54 0 8 0.522485 34 55 0 8 0.567815 34 56 0 8 0.482717 34 57 0 8 0.482709 34 58 0 8 0.486787 34 59 0 8 0.478446 34 65 0 8 0.518184 34 67 0 8 0.446924 34 75 0 8 0.414175 34 81 0 8 0.416965 34 83 0 8 0.533429 36 45 0 8 0.467103 36 47 0 8 0.411479 36 48 0 8 0.425013 36 50 0 8 0.491468 36 52 0 8 0.440038 36 55 0 8 0.438487 36 56 0 8 0.441839 36 57 0 8 0.450989 36 65 0 8 0.518726 36 67 0 8 0.416092 36 75 0 8 0.411197 37 46 0 8 0.493628 37 47 0 8 0.50207 37 48 0 8 0.496868 37 50 0 8 0.530967 37 52 0 8 0.474606 37 53 0 8 0.434399 37 54 0 8 0.477574 37 55 0 8 0.525282 37 56 0 8 0.545329 37 57 0 8 0.526238 37 58 0 8 0.417294 37 63 0 8 0.44929 37 64 0 8 0.504228 37 65 0 8 0.615932 37 67 0 8 0.479992 37 71 0 8 0.448563 37 72 0 8 0.416858 37 73 0 8 0.448723 37 75 0 8 0.418869 38 47 0 8 0.659123 38 48 0 8 0.626986 38 49 0 8 0.465587 38 50 0 8 0.812635 38 51 0 8 0.583262 38 52 0 8 0.818614 38 53 0 8 0.836898 38 54 0 8 0.887675 38 55 0 8 0.897961 38 56 0 8 0.731862 38 57 0 8 0.543001 38 58 0 8 0.421922 38 59 0 8 0.462738 38 61 0 8 0.48912 38 62 0 8 0.798551 38 63 0 8 0.806436 38 64 0 8 0.625619 38 65 0 8 0.840505 38 67 0 8 0.5223 38 68 0 8 0.409959 38 69 0 8 0.617501 38 70 0 8 0.583949 38 71 0 8 0.835109 38 72 0 8 0.692534 38 73 0 8 0.694372 38 75 0 8 0.592 38 77 0 8 0.666072 38 78 0 8 0.625332 38 80 0 8 0.581106 38 81 0 8 0.632822 38 82 0 8 0.486788 38 83 0 8 0.742868 39 48 0 8 0.630969 39 49 0 8 0.502212 39 50 0 8 0.70708 39 51 0 8 0.577197 39 52 0 8 0.686809 39 53 0 8 0.677905 39 54 0 8 0.701145 39 55 0 8 0.711087 39 56 0 8 0.643054 39 57 0 8 0.545108 39 58 0 8 0.447404 39 59 0 8 0.474878 39 61 0 8 0.477024 39 62 0 8 0.574113 39 63 0 8 0.67733 39 64 0 8 0.629547 39 65 0 8 0.668015 39 67 0 8 0.512088 39 68 0 8 0.433495 39 69 0 8 0.499422 39 70 0 8 0.518816 39 71 0 8 0.635033 39 72 0 8 0.513714 39 73 0 8 0.477355 39 75 0 8 0.44169 39 83 0 8 0.49784 40 49 0 8 0.4965 40 50 0 8 0.700382 40 51 0 8 0.584094 40 52 0 8 0.694859 40 53 0 8 0.677526 40 54 0 8 0.687243 40 55 0 8 0.678859 40 56 0 8 0.571313 40 57 0 8 0.473239 40 58 0 8 0.423239 40 59 0 8 0.480908 40 61 0 8 0.505587 40 62 0 8 0.631485 40 63 0 8 0.695868 40 64 0 8 0.624833 40 65 0 8 0.663615 40 67 0 8 0.521958 40 68 0 8 0.464363 40 69 0 8 0.556501 40 70 0 8 0.568361 40 71 0 8 0.693197 40 72 0 8 0.620913 40 73 0 8 0.5817 40 74 0 8 0.412968 40 75 0 8 0.516813 40 77 0 8 0.486185 40 78 0 8 0.429657 40 80 0 8 0.435536 40 81 0 8 0.452425 40 83 0 8 0.530319 41 50 0 8 0.78742 41 51 0 8 0.624349 41 52 0 8 0.788064 41 53 0 8 0.788799 41 54 0 8 0.833265 41 55 0 8 0.823395 41 56 0 8 0.590406 41 57 0 8 0.455183 41 58 0 8 0.427064 41 59 0 8 0.495557 41 61 0 8 0.515235 41 62 0 8 0.762194 41 63 0 8 0.731232 41 64 0 8 0.576606 41 65 0 8 0.736389 41 67 0 8 0.539702 41 68 0 8 0.489343 41 69 0 8 0.651013 41 70 0 8 0.591627 41 71 0 8 0.812204 41 72 0 8 0.733354 41 73 0 8 0.686491 41 74 0 8 0.427091 41 75 0 8 0.584623 41 77 0 8 0.641238 41 78 0 8 0.605444 41 80 0 8 0.531405 41 81 0 8 0.573241 41 82 0 8 0.430627 41 83 0 8 0.670567 42 51 0 8 0.585968 42 52 0 8 0.695566 42 53 0 8 0.633957 42 54 0 8 0.645682 42 55 0 8 0.627512 42 56 0 8 0.515849 42 57 0 8 0.453117 42 58 0 8 0.453331 42 59 0 8 0.498441 42 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