PFRMAT RR TARGET TR464 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplccrr.th62.17.730_47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 18 MODEL 1 LSLLESKGLEALNKAIASGTVQRADGSIQNQSLHEALITRDRKQVFRIED SIPVLLPEEAIATIQIANF 38 47 0 8 0.160401 38 49 0 8 0.152563 38 50 0 8 0.218886 38 53 0 8 0.289219 38 55 0 8 0.244344 38 56 0 8 0.174862 38 57 0 8 0.119347 38 58 0 8 0.0810746 38 59 0 8 0.117436 38 62 0 8 0.174466 38 63 0 8 0.18713 38 64 0 8 0.207281 38 65 0 8 0.342795 38 67 0 8 0.0835523 38 68 0 8 0.10884 38 69 0 8 0.0970723 38 70 0 8 0.109711 38 71 0 8 0.162983 38 72 0 8 0.200983 38 73 0 8 0.208422 38 76 0 8 0.0558733 38 79 0 8 0.0628275 38 80 0 8 0.097988 38 82 0 8 0.0790905 38 84 0 8 0.07353 39 55 0 8 0.122597 39 57 0 8 0.0874797 39 58 0 8 0.111618 39 62 0 8 0.109995 39 67 0 8 0.102448 40 49 0 8 0.0838907 40 55 0 8 0.0771523 40 57 0 8 0.0729909 40 58 0 8 0.0453923 40 67 0 8 0.0527003 40 69 0 8 0.0599452 43 52 0 8 0.0336225 43 53 0 8 0.0353331 43 55 0 8 0.0337843 43 56 0 8 0.0345071 43 57 0 8 0.0271033 43 58 0 8 0.0422507 43 59 0 8 0.0919723 43 62 0 8 0.157434 43 63 0 8 0.103374 43 64 0 8 0.0472741 43 65 0 8 0.0860603 43 67 0 8 0.0454706 43 69 0 8 0.0338903 43 70 0 8 0.0684581 43 71 0 8 0.103937 43 72 0 8 0.117012 43 73 0 8 0.0745557 43 79 0 8 0.0891078 43 80 0 8 0.0632206 43 82 0 8 0.0871282 43 84 0 8 0.0419571 44 55 0 8 0.0373415 44 57 0 8 0.0240004 44 58 0 8 0.0344984 44 62 0 8 0.0771316 44 67 0 8 0.0523448 45 55 0 8 0.0600293 45 58 0 8 0.0424724 45 67 0 8 0.0515826 46 55 0 8 0.0782116 46 56 0 8 0.0505379 46 57 0 8 0.0303257 46 58 0 8 0.0586486 46 62 0 8 0.143066 46 67 0 8 0.0684592 46 69 0 8 0.0945292 46 70 0 8 0.115875 46 71 0 8 0.163596 46 72 0 8 0.222453 46 79 0 8 0.0486429 46 80 0 8 0.0588975 46 82 0 8 0.0571785 47 56 0 8 0.024068 47 57 0 8 0.0203491 47 58 0 8 0.0288506 47 59 0 8 0.0746634 47 62 0 8 0.0737259 47 63 0 8 0.084349 47 64 0 8 0.0450891 47 65 0 8 0.0688877 47 67 0 8 0.0316811 47 68 0 8 0.0357388 47 69 0 8 0.02102 47 70 0 8 0.047348 47 71 0 8 0.142106 47 72 0 8 0.110592 47 73 0 8 0.0715566 47 74 0 8 0.041305 47 75 0 8 0.0408984 47 76 0 8 0.0487554 47 79 0 8 0.0223554 47 80 0 8 0.0384897 47 82 0 8 0.0243813 47 84 0 8 0.0690183 49 58 0 8 0.0291452 49 62 0 8 0.097821 49 67 0 8 0.0257844 49 69 0 8 0.0157279 49 70 0 8 0.0330126 49 71 0 8 0.0663828 49 72 0 8 0.0821926 49 82 0 8 0.0542284 50 59 0 8 0.0572335 50 62 0 8 0.189186 50 63 0 8 0.135303 50 64 0 8 0.072206 50 65 0 8 0.150661 50 67 0 8 0.0691954 50 68 0 8 0.0689461 50 69 0 8 0.126389 50 70 0 8 0.115805 50 71 0 8 0.166994 50 72 0 8 0.159776 50 73 0 8 0.134632 50 79 0 8 0.0436907 50 80 0 8 0.0594349 50 82 0 8 0.0555001 51 60 0 8 0.0571804 51 62 0 8 0.0905011 51 63 0 8 0.101415 51 64 0 8 0.0778989 51 65 0 8 0.105339 51 67 0 8 0.0420478 51 69 0 8 0.0288494 51 70 0 8 0.0542429 51 71 0 8 0.0947914 51 72 0 8 0.132974 51 73 0 8 0.0734302 51 74 0 8 0.0652755 51 75 0 8 0.0540153 51 76 0 8 0.0795309 51 82 0 8 0.0589605 51 84 0 8 0.0602903 53 62 0 8 0.183709 53 64 0 8 0.372653 53 65 0 8 0.493501 53 67 0 8 0.0853394 53 69 0 8 0.0844565 53 72 0 8 0.286782 53 73 0 8 0.239125 53 74 0 8 0.0928527 53 82 0 8 0.0693729 53 84 0 8 0.0630482 54 63 0 8 0.590657 54 64 0 8 0.430679 54 65 0 8 0.625378 54 67 0 8 0.0991673 54 69 0 8 0.17783 54 70 0 8 0.246938 54 71 0 8 0.388472 54 72 0 8 0.385882 54 73 0 8 0.426117 54 74 0 8 0.0687143 54 75 0 8 0.0932916 54 80 0 8 0.0427395 54 81 0 8 0.0483003 54 82 0 8 0.0488967 54 84 0 8 0.039483 55 64 0 8 0.214002 55 65 0 8 0.514215 55 66 0 8 0.0738055 55 67 0 8 0.116083 55 68 0 8 0.13736 55 69 0 8 0.295246 55 70 0 8 0.33475 55 71 0 8 0.38244 55 72 0 8 0.297394 55 73 0 8 0.450193 55 74 0 8 0.0553315 55 75 0 8 0.0843019 55 76 0 8 0.0636814 55 78 0 8 0.2365 55 79 0 8 0.0374705 55 80 0 8 0.0392129 55 81 0 8 0.0482483 55 82 0 8 0.0463853 55 84 0 8 0.0358397 56 65 0 8 0.181371 56 66 0 8 0.0411282 56 67 0 8 0.11112 56 68 0 8 0.114287 56 69 0 8 0.149263 56 70 0 8 0.218467 56 71 0 8 0.259939 56 72 0 8 0.216396 56 73 0 8 0.187931 56 74 0 8 0.0495329 56 75 0 8 0.0849302 56 76 0 8 0.0956151 56 78 0 8 0.1176 56 79 0 8 0.045482 56 80 0 8 0.0435684 56 81 0 8 0.0522992 56 82 0 8 0.0516117 56 84 0 8 0.0430279 57 66 0 8 0.0444702 57 67 0 8 0.0209844 57 68 0 8 0.039281 57 69 0 8 0.0204731 57 70 0 8 0.0395628 57 71 0 8 0.0731528 57 72 0 8 0.0751351 57 73 0 8 0.0510536 57 74 0 8 0.0226681 57 75 0 8 0.0235419 57 76 0 8 0.04016 57 78 0 8 0.0288312 57 79 0 8 0.0148597 57 80 0 8 0.0241391 57 81 0 8 0.0380098 57 82 0 8 0.0158981 57 84 0 8 0.0166995 58 67 0 8 0.0315428 58 68 0 8 0.053486 58 69 0 8 0.0258555 58 70 0 8 0.068351 58 71 0 8 0.118922 58 72 0 8 0.142994 58 73 0 8 0.0856685 58 74 0 8 0.0458768 58 75 0 8 0.0539355 58 76 0 8 0.0751824 58 78 0 8 0.0485414 58 79 0 8 0.0353105 58 80 0 8 0.0347188 58 81 0 8 0.0403469 58 82 0 8 0.0411603 58 84 0 8 0.0402055 59 68 0 8 0.0439628 59 69 0 8 0.0313367 59 70 0 8 0.0639287 59 71 0 8 0.140955 59 72 0 8 0.151594 59 73 0 8 0.107349 59 74 0 8 0.0578053 59 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