PFRMAT RR TARGET TR464 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplcc.th62.47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 18 MODEL 1 LSLLESKGLEALNKAIASGTVQRADGSIQNQSLHEALITRDRKQVFRIED SIPVLLPEEAIATIQIANF 20 29 0 8 0.772819 20 30 0 8 0.554942 20 32 0 8 0.561649 20 33 0 8 0.620675 20 38 0 8 0.715184 20 39 0 8 0.560681 20 40 0 8 0.664205 20 41 0 8 0.724756 20 42 0 8 0.493754 20 45 0 8 0.54729 20 46 0 8 0.53009 20 50 0 8 0.616399 20 51 0 8 0.528583 20 52 0 8 0.585329 20 53 0 8 0.764482 20 54 0 8 0.676037 20 55 0 8 0.653616 20 56 0 8 0.508249 20 62 0 8 0.562083 20 63 0 8 0.556985 20 65 0 8 0.60412 20 66 0 8 0.509095 20 67 0 8 0.475545 20 69 0 8 0.528624 20 71 0 8 0.581068 20 72 0 8 0.646392 20 73 0 8 0.626511 20 75 0 8 0.520557 20 77 0 8 0.598932 20 78 0 8 0.567887 20 81 0 8 0.475436 20 83 0 8 0.498355 21 30 0 8 0.785456 21 32 0 8 0.645852 21 33 0 8 0.831153 21 36 0 8 0.576501 21 38 0 8 0.744684 21 39 0 8 0.642574 21 40 0 8 0.695591 21 41 0 8 0.761514 21 42 0 8 0.717195 21 45 0 8 0.583882 21 46 0 8 0.61244 21 50 0 8 0.811524 21 51 0 8 0.498783 21 52 0 8 0.792577 21 53 0 8 0.668711 21 54 0 8 0.842807 21 55 0 8 0.837057 21 56 0 8 0.72636 21 62 0 8 0.685091 21 63 0 8 0.640911 21 65 0 8 0.687478 21 67 0 8 0.669991 21 68 0 8 0.484493 21 69 0 8 0.722806 21 70 0 8 0.586911 21 71 0 8 0.715297 21 72 0 8 0.73738 21 73 0 8 0.770183 21 75 0 8 0.680757 21 77 0 8 0.673355 21 78 0 8 0.71843 21 81 0 8 0.483173 21 83 0 8 0.563339 22 32 0 8 0.463451 22 38 0 8 0.657857 22 41 0 8 0.516656 22 45 0 8 0.468192 23 32 0 8 0.572959 23 35 0 8 0.543909 23 37 0 8 0.601262 23 38 0 8 0.55253 23 40 0 8 0.491984 23 41 0 8 0.575824 23 45 0 8 0.589187 23 59 0 8 0.495388 23 80 0 8 0.54237 23 81 0 8 0.592188 23 83 0 8 0.464453 25 41 0 8 0.544878 26 36 0 8 0.531219 26 38 0 8 0.749593 26 39 0 8 0.626905 26 40 0 8 0.626826 26 41 0 8 0.727534 26 42 0 8 0.59371 26 45 0 8 0.540165 26 46 0 8 0.57151 26 50 0 8 0.713904 26 52 0 8 0.70511 26 53 0 8 0.670035 26 54 0 8 0.770473 26 55 0 8 0.778247 26 56 0 8 0.647321 26 62 0 8 0.671096 26 63 0 8 0.631813 26 65 0 8 0.693307 26 67 0 8 0.629604 26 69 0 8 0.668851 26 70 0 8 0.591277 26 71 0 8 0.669948 26 72 0 8 0.670047 26 73 0 8 0.762378 26 75 0 8 0.681462 26 77 0 8 0.597093 26 78 0 8 0.737112 26 81 0 8 0.481892 26 83 0 8 0.508129 27 38 0 8 0.558419 27 41 0 8 0.564135 27 71 0 8 0.474998 28 38 0 8 0.576423 28 41 0 8 0.563398 28 50 0 8 0.486104 28 52 0 8 0.479334 28 54 0 8 0.561455 28 55 0 8 0.552876 28 65 0 8 0.513713 28 71 0 8 0.792097 29 38 0 8 0.882629 29 39 0 8 0.666091 29 40 0 8 0.664639 29 41 0 8 0.774349 29 42 0 8 0.573996 29 45 0 8 0.608069 29 46 0 8 0.505481 29 48 0 8 0.473939 29 50 0 8 0.738566 29 51 0 8 0.46603 29 52 0 8 0.758003 29 53 0 8 0.768807 29 54 0 8 0.832698 29 55 0 8 0.827058 29 56 0 8 0.611506 29 62 0 8 0.730307 29 63 0 8 0.669886 29 65 0 8 0.721315 29 67 0 8 0.503338 29 69 0 8 0.594406 29 70 0 8 0.507399 29 71 0 8 0.715147 29 72 0 8 0.683105 29 73 0 8 0.723531 29 75 0 8 0.570968 29 77 0 8 0.620845 29 78 0 8 0.704605 29 80 0 8 0.502041 29 81 0 8 0.616279 29 82 0 8 0.506492 29 83 0 8 0.674455 30 39 0 8 0.710584 30 40 0 8 0.703009 30 41 0 8 0.801627 30 42 0 8 0.613794 30 46 0 8 0.617728 30 50 0 8 0.74039 30 52 0 8 0.707955 30 53 0 8 0.681989 30 54 0 8 0.779775 30 55 0 8 0.801271 30 56 0 8 0.66517 30 62 0 8 0.68257 30 63 0 8 0.640509 30 65 0 8 0.730568 30 67 0 8 0.55425 30 69 0 8 0.572923 30 70 0 8 0.483506 30 71 0 8 0.625666 30 72 0 8 0.657369 30 73 0 8 0.731267 30 75 0 8 0.61924 30 77 0 8 0.583023 30 78 0 8 0.674708 30 83 0 8 0.549315 31 41 0 8 0.574273 31 45 0 8 0.508497 32 41 0 8 0.689047 32 45 0 8 0.607698 32 50 0 8 0.538922 32 52 0 8 0.529826 32 53 0 8 0.517 32 54 0 8 0.606928 32 55 0 8 0.606397 32 59 0 8 0.470806 32 62 0 8 0.65921 32 65 0 8 0.556314 32 71 0 8 0.516415 32 72 0 8 0.471061 32 73 0 8 0.468781 32 77 0 8 0.562491 32 78 0 8 0.483247 32 80 0 8 0.534447 32 81 0 8 0.606656 32 83 0 8 0.511782 33 42 0 8 0.723544 33 45 0 8 0.636816 33 46 0 8 0.657059 33 47 0 8 0.508929 33 48 0 8 0.517575 33 50 0 8 0.815068 33 51 0 8 0.512831 33 52 0 8 0.794616 33 53 0 8 0.768585 33 54 0 8 0.865944 33 55 0 8 0.890838 33 56 0 8 0.773723 33 62 0 8 0.725943 33 63 0 8 0.735658 33 64 0 8 0.536916 33 65 0 8 0.821409 33 67 0 8 0.607567 33 68 0 8 0.466084 33 69 0 8 0.677604 33 70 0 8 0.571273 33 71 0 8 0.665451 33 72 0 8 0.726553 33 73 0 8 0.755429 33 75 0 8 0.642398 33 77 0 8 0.640108 33 78 0 8 0.737694 33 81 0 8 0.543302 33 83 0 8 0.648883 34 45 0 8 0.515498 34 50 0 8 0.559774 34 52 0 8 0.481667 34 54 0 8 0.581305 34 55 0 8 0.606719 34 56 0 8 0.485356 34 62 0 8 0.4695 34 65 0 8 0.534734 35 45 0 8 0.583419 35 80 0 8 0.515406 35 81 0 8 0.535713 36 50 0 8 0.738905 36 52 0 8 0.728174 36 54 0 8 0.63511 36 55 0 8 0.686266 36 56 0 8 0.604586 36 65 0 8 0.595312 36 67 0 8 0.493733 36 73 0 8 0.524745 36 75 0 8 0.476121 36 78 0 8 0.514353 37 46 0 8 0.516153 37 47 0 8 0.564816 37 48 0 8 0.562398 37 49 0 8 0.495429 37 50 0 8 0.51556 37 53 0 8 0.476927 37 54 0 8 0.522894 37 55 0 8 0.604995 37 56 0 8 0.530972 37 57 0 8 0.605687 37 59 0 8 0.571361 37 62 0 8 0.526069 37 63 0 8 0.507982 37 64 0 8 0.474473 37 65 0 8 0.711176 37 72 0 8 0.509224 37 81 0 8 0.518172 37 83 0 8 0.52971 38 47 0 8 0.715158 38 48 0 8 0.7207 38 49 0 8 0.646162 38 50 0 8 0.848697 38 51 0 8 0.676772 38 52 0 8 0.816073 38 53 0 8 0.878773 38 54 0 8 0.880295 38 55 0 8 0.896325 38 56 0 8 0.799803 38 57 0 8 0.625094 38 58 0 8 0.498736 38 59 0 8 0.664565 38 60 0 8 0.47432 38 61 0 8 0.521526 38 62 0 8 0.818436 38 63 0 8 0.80812 38 64 0 8 0.675509 38 65 0 8 0.871049 38 66 0 8 0.629425 38 67 0 8 0.600798 38 68 0 8 0.485404 38 69 0 8 0.681594 38 70 0 8 0.613081 38 71 0 8 0.766805 38 72 0 8 0.794648 38 73 0 8 0.802826 38 75 0 8 0.64965 38 77 0 8 0.751697 38 78 0 8 0.696457 38 80 0 8 0.62376 38 81 0 8 0.710673 38 82 0 8 0.517961 38 83 0 8 0.726739 38 84 0 8 0.57204 39 48 0 8 0.601166 39 49 0 8 0.554176 39 50 0 8 0.727546 39 51 0 8 0.568324 39 52 0 8 0.685025 39 53 0 8 0.65999 39 54 0 8 0.756764 39 55 0 8 0.757189 39 56 0 8 0.631919 39 57 0 8 0.500486 39 58 0 8 0.512901 39 59 0 8 0.467093 39 61 0 8 0.537583 39 62 0 8 0.703553 39 63 0 8 0.735925 39 64 0 8 0.553658 39 65 0 8 0.782094 39 67 0 8 0.466453 39 68 0 8 0.477779 39 69 0 8 0.532083 39 70 0 8 0.48999 39 71 0 8 0.646755 39 72 0 8 0.729332 39 73 0 8 0.643946 39 75 0 8 0.488433 39 77 0 8 0.568773 39 78 0 8 0.517735 39 83 0 8 0.543513 40 49 0 8 0.535409 40 50 0 8 0.678561 40 51 0 8 0.658741 40 52 0 8 0.645068 40 53 0 8 0.702067 40 54 0 8 0.68793 40 55 0 8 0.650857 40 56 0 8 0.504656 40 57 0 8 0.560608 40 59 0 8 0.517815 40 61 0 8 0.544843 40 62 0 8 0.658893 40 63 0 8 0.676339 40 64 0 8 0.530748 40 65 0 8 0.684413 40 66 0 8 0.474054 40 68 0 8 0.499295 40 69 0 8 0.553923 40 70 0 8 0.505477 40 71 0 8 0.628577 40 72 0 8 0.696137 40 73 0 8 0.59733 40 75 0 8 0.489594 40 77 0 8 0.524489 40 78 0 8 0.500201 40 80 0 8 0.465619 40 81 0 8 0.522195 40 83 0 8 0.50134 41 50 0 8 0.767444 41 51 0 8 0.76067 41 52 0 8 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