Best Alignments for TR462

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2gcxA	7.9568e-12	2gcxA/TR462-2gcxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2h3jA	8.8896e-12	2h3jA/TR462-2h3jA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1fx7A	1.6762e-05	1fx7A/TR462-1fx7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.24 a.76.1.1 b.34.1.2
2qq9A	2.3773e-04	2qq9A/TR462-2qq9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dtr	4.5404e-04	2dtr/TR462-2dtr-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dtrA	7.0881e-04	2dtrA/TR462-2dtrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.24 a.76.1.1 b.34.1.2
1bi0	1.0244e-03	1bi0/TR462-1bi0-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qw1A	2.8370e-03	1qw1A/TR462-1qw1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pujA	1.0048e-01	1pujA/TR462-1pujA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.8
1bymA	1.6534e-01	1bymA/TR462-1bymA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.1.2
3cnlA	2.5823e-01	3cnlA/TR462-3cnlA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2e87A	3.2176e-01	2e87A/TR462-2e87A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qu8A	3.2927e-01	2qu8A/TR462-2qu8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1sviA	6.5605e-01	1sviA/TR462-1sviA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.8
1wf3A	7.4379e-01	1wf3A/TR462-1wf3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.8 d.52.3.1
1tq4A	8.9109e-01	1tq4A/TR462-1tq4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.8
2gj8A	1.0626e+00	2gj8A/TR462-2gj8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.8
1puiA	1.5490e+00	1puiA/TR462-1puiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.8
2hjgA	1.6150e+00	2hjgA/TR462-2hjgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1fzqA	1.7654e+00	1fzqA/TR462-1fzqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.8

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001