# List of top-scoring protein chains for TR462.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.84e-05		
2gcxA	75	5.44e-05		
1fx7A	230	0.6206	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2z83A	459	6.895		
2qeqA	434	10.45		
2dchX	216	21.71		
2inbA	140	25.27		
2okfA	140	38.11		
2vbcA	618	48.29		
1qvpA	87	48.77	b.34.1.2	111659
1j6oA	268	50.93	c.1.9.12	77088
1bymA	97	51.42	b.34.1.2	24458
1egaA	301	63.60	c.37.1.8,d.52.3.1	32150,38836
1y8xB	98	64.16		
1qw1A	121	64.88		
1sjpA	504	66.50	a.129.1.1,c.8.5.1,d.56.1.1	112092,112093,112094
1g3tA	226	73.03	a.4.5.24,a.76.1.1,b.34.1.2	65127,65128,65129
2qqbA	226	73.51		
2qq9A	226	73.51		
2qqaA	226	73.67		
2tdxA	226	73.75	a.4.5.24,a.76.1.1	16201,18407
2ekkA	47	75.46		
2uzpA	144	75.67		
1fwzA	226	82.45	a.4.5.24,a.76.1.1,b.34.1.2	60077,60078,60079
1c0wA	225	82.92	a.4.5.24,a.76.1.1,b.34.1.2	16211,18417,24455
2dtrA	226	83.00	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1p92A	226	83.28	a.4.5.24,a.76.1.1,b.34.1.2	104085,104086,104087
1g3yA	226	84.30	a.4.5.24,a.76.1.1,b.34.1.2	65136,65137,65138
2p91A	285	88.46		
1x18X	292	89.61	c.37.1.8,d.52.3.1	121577,121578