# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 3.56e-12 2gcxA 75 2.17e-11 1fx7A 230 8.64e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 9.07e-05 2dtr 226 0.000120 2qq9A 226 0.000191 2dtrA 226 0.000700 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.001470 1bymA 97 0.4308 b.34.1.2 24458 1pujA 282 1.457 c.37.1.8 88294 2qu8A 228 1.594 1fzqA 181 2.495 c.37.1.8 32060 1pjzA 203 3.116 c.66.1.36 94794 3cnlA 262 3.449 1va0A 239 3.595 c.90.1.1 119899 1puiA 210 6.214 c.37.1.8 88292 2gj8A 172 6.354 c.37.1.8 135270 1sviA 195 6.396 c.37.1.8 106048 2cxxA 190 6.712 c.37.1.8 131013 1wf3A 301 6.962 c.37.1.8,d.52.3.1 114574,114575 1tq4A 413 8.009 c.37.1.8 107201 2hjgA 436 8.825 1h65A 270 10.47 c.37.1.8 65640 2e87A 357 11.15 2qwvA 208 13.00 3defA 262 14.10 1oixA 191 16.34 c.37.1.8 118710 1egaA 301 20.63 c.37.1.8,d.52.3.1 32150,38836 1u8zA 168 21.26 c.37.1.8 113212 2dpxA 174 21.44 1z06A 189 22.14 c.37.1.8 124301 1xtqA 177 22.55 c.37.1.8 122297 2qi9C 249 22.83 2gjsA 176 23.00 c.37.1.8 135287 1zd9A 188 26.48 c.37.1.8 124938 1cbfA 285 28.50 c.90.1.1 35587 1tq6A 413 28.97 c.37.1.8 107202 2c81A 418 32.59 2bwjA 199 32.89 1cj3A 392 32.99 c.3.1.2,d.16.1.2 30347,37878 3bfkA 181 33.10 2pzeA 229 33.52 1jeiA 53 33.91 a.140.1.1 62918 1pjqA 457 34.12 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1m2oB 190 34.28 c.37.1.8 78485 2h17A 181 34.95 1uuzA 137 34.99 d.233.1.1 100024 1ukvY 206 35.77 c.37.1.8 107918 1lnzA 342 36.30 b.117.1.1,c.37.1.8 78112,78113 2qagB 427 37.43 1gjjA 168 39.73 a.140.1.1,a.140.1.1 83291,83292 1nrjB 218 40.64 c.37.1.8 86125 2dykA 161 40.81 1ji0A 240 41.67 c.37.1.12 71665 1l2tA 235 42.23 c.37.1.12 73514 1oivA 191 42.52 c.37.1.8 93076 1b0uA 262 43.53 c.37.1.12 32370 2p5sA 199 44.28 1yzgA 179 44.60 c.37.1.8 124276 2bmeA 186 44.73 c.37.1.8 128790 2ew1A 201 44.88 c.37.1.8 132446 2j0nA 200 45.02 a.250.1.1 137899 2cbzA 237 45.93 2qm8A 337 46.03 1x3sA 195 48.08 c.37.1.8 121670 2pmkA 243 50.95 2f9lA 199 51.91 c.37.1.8 133166 2bbsA 290 52.07 1vekA 84 52.15 a.5.2.1 113636 2ooiA 162 52.33 1q2kA 31 52.68 g.3.7.2 95630 1wmsA 177 52.91 c.37.1.8 109414 1z3eB 73 55.43 a.60.3.1 124401 2atvA 196 56.02 c.37.1.8 127308 1y8xB 98 56.46 2yv5A 302 57.16 1r0wA 286 59.06 c.37.1.12 96754 2pcjA 224 59.35 1ky3A 182 60.34 c.37.1.8 73193 1e0cA 271 61.59 c.46.1.2,c.46.1.2 32717,32718 1x1rA 178 61.99 c.37.1.8 121595 2aznA 219 62.09 c.71.1.2 127608 1yzqA 170 62.39 c.37.1.8 124286 2v9cA 215 63.63 1gajA 257 65.00 c.37.1.12 60416 1sgwA 214 65.26 c.37.1.12 105541 2db1A 118 65.32 2ce2X 166 65.82 1xmiA 291 65.93 c.37.1.12 115489 2b8wA 328 69.75 1opd 85 70.38 1r9cA 139 71.11 d.32.1.2 97255 2fjtA 182 71.84 1b9hA 388 71.95 c.67.1.4 34488 1d1gA 168 72.07 c.71.1.1 34889 2bivA 243 72.98 b.34.9.3,b.34.9.3 128592,128593 1g291 372 73.41 1jj7A 260 74.36 c.37.1.12 63114 1uptA 171 75.38 c.37.1.8 99767 1nkrA 201 75.51 b.1.1.4,b.1.1.4 21799,21800 1kshA 186 75.84 c.37.1.8 72914 1g6hA 257 79.78 c.37.1.12 60318 1tzjA 338 80.32 c.79.1.1 112868 1l7vC 249 80.99 c.37.1.12 73674 2dbyA 368 81.74 1ctqA 166 81.88 c.37.1.8 31965 1vplA 256 82.83 c.37.1.12 113966 1h9fA 57 83.05 a.140.1.1 60826 2g6bA 180 83.19 c.37.1.8 134701 1noaA 113 83.46 b.1.7.1 22208 1z2aA 168 84.63 c.37.1.8 124374 2ff7A 247 85.03 c.37.1.12 133377 2bcgY 206 86.30 c.37.1.8 128285 3bwgA 239 87.04 1sltA 134 87.47 b.29.1.3 24186 1pch 88 88.05 2qh8A 302 88.10 2h57A 190 88.77