# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 7.81e-12 2gcxA 75 4.07e-11 1fx7A 230 1.51e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 2.26e-05 1bi0 226 0.000288 2qq9A 226 0.000592 2dtrA 226 0.000618 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.003989 1bymA 97 0.1487 b.34.1.2 24458 2qu8A 228 1.830 1pujA 282 2.290 c.37.1.8 88294 1fzqA 181 4.297 c.37.1.8 32060 3cnlA 262 4.645 1va0A 239 5.506 c.90.1.1 119899 2e87A 357 5.863 2gj8A 172 6.838 c.37.1.8 135270 2cxxA 190 7.679 c.37.1.8 131013 1wf3A 301 7.870 c.37.1.8,d.52.3.1 114574,114575 1pjzA 203 7.964 c.66.1.36 94794 1sviA 195 8.305 c.37.1.8 106048 1h65A 270 8.426 c.37.1.8 65640 1puiA 210 8.497 c.37.1.8 88292 1tq4A 413 10.59 c.37.1.8 107201 2hjgA 436 12.12 2qwvA 208 12.43 3defA 262 17.60 1h9fA 57 22.23 a.140.1.1 60826 2bwjA 199 24.61 1jeiA 53 27.44 a.140.1.1 62918 1egaA 301 28.21 c.37.1.8,d.52.3.1 32150,38836 1e0cA 271 28.42 c.46.1.2,c.46.1.2 32717,32718 2c81A 418 30.10 1u8zA 168 30.34 c.37.1.8 113212 1oixA 191 32.57 c.37.1.8 118710 2j0nA 200 33.38 a.250.1.1 137899 1uuzA 137 33.52 d.233.1.1 100024 1zd9A 188 34.36 c.37.1.8 124938 1z06A 189 37.65 c.37.1.8 124301 1xtqA 177 37.75 c.37.1.8 122297 2v9cA 215 41.40 2pzeA 229 42.81 2dykA 161 43.20 2qi9C 249 43.41 1pjqA 457 43.59 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1b9hA 388 44.58 c.67.1.4 34488 2h17A 181 45.25 1l2tA 235 46.30 c.37.1.12 73514 1r7aA 504 47.03 b.71.1.1,c.1.8.1 97192,97193 1tq6A 413 48.04 c.37.1.8 107202 2dpxA 174 48.12 1sltA 134 49.00 b.29.1.3 24186 1nrjB 218 49.63 c.37.1.8 86125 1opd 85 51.73 1nkrA 201 52.43 b.1.1.4,b.1.1.4 21799,21800 2gjsA 176 53.40 c.37.1.8 135287 1vekA 84 54.11 a.5.2.1 113636 2cbzA 237 55.01 2qagB 427 56.72 1cbfA 285 57.86 c.90.1.1 35587 1o6aA 96 58.11 b.139.1.1 92562 2ooiA 162 59.37 1x8mA 288 59.73 b.82.1.13 109516 3bfkA 181 59.90 1ukvY 206 61.48 c.37.1.8 107918 2fjtA 182 62.66 2pz0A 252 62.83 1y8xB 98 63.26 1d1gA 168 63.58 c.71.1.1 34889 1ukzA 203 64.02 c.37.1.1 31840 2pmkA 243 64.51 1m2oB 190 64.63 c.37.1.8 78485 2bmeA 186 69.82 c.37.1.8 128790 2qm8A 337 70.40 2b8wA 328 71.44 1noaA 113 72.76 b.1.7.1 22208 2bbsA 290 73.05 1yfbA 59 73.42 b.129.1.3 123057 2p5sA 199 74.35 3bn1A 373 74.67 2ew1A 201 75.39 c.37.1.8 132446 1ji0A 240 75.50 c.37.1.12 71665 1mdoA 393 76.06 c.67.1.4 79013 1eejA 216 77.14 c.47.1.9,d.17.3.1 33057,38071 1gjjA 168 79.83 a.140.1.1,a.140.1.1 83291,83292 1z0rA 53 80.69 b.129.1.3 124326 2qmmA 197 81.66 1yzgA 179 81.69 c.37.1.8 124276 2aznA 219 82.06 c.71.1.2 127608 2yv5A 302 83.43 1yzqA 170 84.95 c.37.1.8 124286 3b7cA 122 85.12 1gajA 257 85.27 c.37.1.12 60416 1r9cA 139 86.40 d.32.1.2 97255 1pch 88 86.53 1fr3A 67 87.31 b.40.6.1 25436 1gutA 68 87.66 b.40.6.1 65576 1jj7A 260 88.01 c.37.1.12 63114 2pcjA 224 88.15 1z3eB 73 88.54 a.60.3.1 124401 1a53 247 88.87 1vg5A 73 89.01 a.5.2.1 113640 2atvA 196 89.85 c.37.1.8 127308