# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 4.28e-13 2gcxA 75 1.35e-12 1fx7A 230 7.90e-07 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 1.09e-05 2dtr 226 8.82e-05 1qw1A 121 0.000104 2dtrA 226 0.000345 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.000453 1bymA 97 0.01719 b.34.1.2 24458 1pjzA 203 0.2089 c.66.1.36 94794 1pujA 282 1.679 c.37.1.8 88294 2qu8A 228 1.699 1wf3A 301 2.160 c.37.1.8,d.52.3.1 114574,114575 3cnlA 262 2.467 2gj8A 172 2.470 c.37.1.8 135270 2e87A 357 2.481 1jeiA 53 2.615 a.140.1.1 62918 1fzqA 181 3.491 c.37.1.8 32060 1h9fA 57 3.806 a.140.1.1 60826 1sviA 195 3.998 c.37.1.8 106048 1h65A 270 4.575 c.37.1.8 65640 1egaA 301 4.692 c.37.1.8,d.52.3.1 32150,38836 2cxxA 190 5.238 c.37.1.8 131013 2c81A 418 6.393 3defA 262 6.420 1tq4A 413 6.646 c.37.1.8 107201 2inbA 140 9.274 1b9hA 388 10.32 c.67.1.4 34488 1va0A 239 10.50 c.90.1.1 119899 1l2tA 235 10.96 c.37.1.12 73514 2pzeA 229 11.90 3bn1A 373 12.45 2gjsA 176 13.69 c.37.1.8 135287 1puiA 210 13.71 c.37.1.8 88292 2hjgA 436 13.78 2pz0A 252 13.93 1o6aA 96 15.63 b.139.1.1 92562 2dpxA 174 15.67 1opd 85 15.69 1y8xB 98 16.00 1vekA 84 16.57 a.5.2.1 113636 2yv5A 302 16.66 2qi9C 249 17.51 1mdoA 393 17.86 c.67.1.4 79013 1t9hA 307 18.33 b.40.4.5,c.37.1.8 112358,112359 1ji0A 240 18.78 c.37.1.12 71665 1tzjA 338 18.94 c.79.1.1 112868 1lb2B 84 19.13 a.60.3.1 77871 1oixA 191 20.75 c.37.1.8 118710 1o69A 394 21.45 c.67.1.4 92560 2cbzA 237 21.60 2aznA 219 21.98 c.71.1.2 127608 2dykA 161 22.48 2ogeA 399 22.74 1e0cA 271 22.94 c.46.1.2,c.46.1.2 32717,32718 1pch 88 23.33 2pmkA 243 23.77 1u8zA 168 25.08 c.37.1.8 113212 2qh8A 302 25.27 1cexA 214 26.43 c.69.1.30 31285 1rhsA 296 26.58 c.46.1.2,c.46.1.2 32703,32704 2ff7A 247 26.80 c.37.1.12 133377 2qwvA 208 27.15 2nygA 273 27.44 1fr3A 67 28.50 b.40.6.1 25436 1gutA 68 28.80 b.40.6.1 65576 1cj3A 392 29.36 c.3.1.2,d.16.1.2 30347,37878 1sltA 134 29.79 b.29.1.3 24186 1d1gA 168 31.38 c.71.1.1 34889 1zd9A 188 31.69 c.37.1.8 124938 1gjjA 168 31.73 a.140.1.1,a.140.1.1 83291,83292 1b0uA 262 32.13 c.37.1.12 32370 2h17A 181 32.89 1sgwA 214 34.54 c.37.1.12 105541 1xtqA 177 34.55 c.37.1.8 122297 3c6cA 316 34.72 1xmiA 291 34.86 c.37.1.12 115489 1vg5A 73 35.03 a.5.2.1 113640 1r0wA 286 35.60 c.37.1.12 96754 1z3eB 73 35.66 a.60.3.1 124401 2hmvA 144 35.94 c.2.1.9 136615 1is3A 135 35.95 b.29.1.3 76773 1e19A 314 36.18 c.73.1.1 34967 1tq6A 413 36.20 c.37.1.8 107202 2oq1A 254 38.89 d.93.1.1,d.93.1.1 139220,139221 1jj7A 260 38.98 c.37.1.12 63114 2j0nA 200 39.20 a.250.1.1 137899 2pcjA 224 39.43 2bbsA 290 40.53 1o9yA 84 42.20 b.139.1.1 92692 1eziA 228 42.62 c.68.1.13 34512 2gjlA 328 43.15 2p19A 149 43.24 1z06A 189 43.29 c.37.1.8 124301 2b3zA 373 43.83 c.71.1.2,c.97.1.2 127807,127808 2bwjA 199 44.75 2vqeN 61 45.27 1opdA 85 47.47 d.94.1.1 40560 1wwkA 307 47.73 2v5jA 287 48.69 1gajA 257 48.72 c.37.1.12 60416 1nrjB 218 49.06 c.37.1.8 86125 3cq9A 227 50.22 1v95A 130 50.46 c.51.1.1 108435 2mcmA 112 50.96 b.1.7.1 22207 1ukzA 203 51.72 c.37.1.1 31840 2ooiA 162 52.12 2v8pA 271 52.55 2gcgA 330 52.98 1pchA 88 55.43 d.94.1.1 40564 1fjgN 61 55.59 g.39.1.7 45154 2ixeA 271 56.87 1z2mA 155 58.36 d.15.1.1,d.15.1.1 124387,124388 2glwA 92 58.69 1uptA 171 59.08 c.37.1.8 99767 1pswA 348 59.14 c.87.1.7 88287 1kshA 186 59.42 c.37.1.8 72914 1hrkA 359 60.79 c.92.1.1 61228 1oxxK 353 60.80 b.40.6.3,c.37.1.12 93715,93716 3d64A 494 60.82 2d2eA 250 60.83 2uubN 61 60.88 g.39.1.7 139945 1ub4C 85 60.90 b.129.1.1 88401 1l7vC 249 61.32 c.37.1.12 73674 1ptfA 88 62.72 d.94.1.1 40549 2abkA 211 62.95 a.96.1.1 18743 1t3bA 211 63.12 c.47.1.9,d.17.3.1 106341,106342 2fjtA 182 63.60 1bt0A 76 63.89 d.15.1.1 37607 1ptf 88 64.21 1mx3A 347 64.82 c.2.1.4,c.23.12.1 79638,79639 1oivA 191 64.89 c.37.1.8 93076 1jb9A 316 64.98 b.43.4.2,c.25.1.1 62840,62841 1dv0A 47 65.20 a.5.2.1 16289 2b4uA 335 65.49 1g6hA 257 66.00 c.37.1.12 60318 1ktbA 405 66.41 b.71.1.1,c.1.8.1 72960,72961 3bfkA 181 66.57 1a7aA 432 67.10 c.2.1.4,c.23.12.3 30104,31364 1oxsC 353 67.27 b.40.6.3,c.37.1.12 87519,87520 1nkrA 201 68.35 b.1.1.4,b.1.1.4 21799,21800 1gs5A 258 68.65 c.73.1.2 70395 2omkA 231 69.08 1g291 372 69.13 1jx2B 315 69.25 c.37.1.8 67404 2qf3A 243 69.57 2d0iA 333 70.46 1yzqA 170 71.41 c.37.1.8 124286 1ukvY 206 71.62 c.37.1.8 107918 2ebiA 86 71.77 1np3A 338 71.80 a.100.1.2,c.2.1.6 85946,85947 1h9mA 145 71.83 b.40.6.2,b.40.6.2 60833,60834 1noaA 113 72.29 b.1.7.1 22208 2eklA 313 72.30 2j69A 695 73.42 1vplA 256 74.21 c.37.1.12 113966 2b8wA 328 74.54 2cukA 311 74.92 1zzmA 259 74.99 c.1.9.12 125911 1wyuA 438 75.90 c.67.1.7 121452 2bmeA 186 76.55 c.37.1.8 128790 2it1A 362 76.94 1m2oB 190 77.18 c.37.1.8 78485 1q2kA 31 78.40 g.3.7.2 95630 2dbqA 334 78.48 1xwyA 264 78.70 c.1.9.12 122411 1l1jA 239 79.30 b.47.1.1 84516 1xdwA 331 79.49 1c0nA 406 79.79 c.67.1.3 34433 2nq2C 253 80.53 2c2xA 281 81.31 1ltlA 279 81.89 b.40.4.11 84701 1dm9A 133 81.90 d.66.1.3 39560 1wmsA 177 82.56 c.37.1.8 109414 2j5gA 263 83.55 3bkxA 275 84.08 1w34A 304 85.57 b.43.4.2,c.25.1.1 120620,120621 1yzgA 179 86.37 c.37.1.8 124276 1pjqA 457 87.11 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1ve5A 311 88.40 c.79.1.1 120013 1qmgA 524 88.81 a.100.1.2,c.2.1.6 18785,30182