# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 9.10e-12 2gcxA 75 3.76e-11 1fx7A 230 1.64e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 3.55e-05 2qq9A 226 0.000227 1bi0 226 0.000236 2dtrA 226 0.000722 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.002609 1bymA 97 0.4864 b.34.1.2 24458 1pjzA 203 1.610 c.66.1.36 94794 2qu8A 228 2.349 1pujA 282 2.405 c.37.1.8 88294 1fzqA 181 3.954 c.37.1.8 32060 1sviA 195 4.828 c.37.1.8 106048 1va0A 239 5.669 c.90.1.1 119899 1puiA 210 5.802 c.37.1.8 88292 3cnlA 262 7.986 2cxxA 190 8.174 c.37.1.8 131013 1wf3A 301 8.259 c.37.1.8,d.52.3.1 114574,114575 2gj8A 172 9.178 c.37.1.8 135270 2e87A 357 10.62 1oixA 191 12.17 c.37.1.8 118710 2hjgA 436 12.45 2bwjA 199 15.54 2c81A 418 15.67 1tq4A 413 15.71 c.37.1.8 107201 1h65A 270 17.46 c.37.1.8 65640 1zd9A 188 19.12 c.37.1.8 124938 1u8zA 168 19.41 c.37.1.8 113212 1egaA 301 20.66 c.37.1.8,d.52.3.1 32150,38836 2gjsA 176 21.55 c.37.1.8 135287 2v9cA 215 22.15 1cj3A 392 22.36 c.3.1.2,d.16.1.2 30347,37878 3defA 262 23.81 1xtqA 177 23.94 c.37.1.8 122297 1ukzA 203 25.97 c.37.1.1 31840 1z06A 189 26.45 c.37.1.8 124301 2dpxA 174 27.22 3bfkA 181 27.88 1jeiA 53 28.72 a.140.1.1 62918 1nrjB 218 29.41 c.37.1.8 86125 2qwvA 208 30.09 1b9hA 388 31.17 c.67.1.4 34488 1udxA 416 31.73 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1l2tA 235 32.15 c.37.1.12 73514 1oivA 191 32.23 c.37.1.8 93076 3c6cA 316 35.25 1gjjA 168 36.06 a.140.1.1,a.140.1.1 83291,83292 1tq6A 413 37.05 c.37.1.8 107202 2j0nA 200 38.05 a.250.1.1 137899 1h9fA 57 38.89 a.140.1.1 60826 2aznA 219 42.87 c.71.1.2 127608 1lnzA 342 44.09 b.117.1.1,c.37.1.8 78112,78113 3bn1A 373 44.33 1mdoA 393 45.54 c.67.1.4 79013 2pzeA 229 45.80 1wmsA 177 46.52 c.37.1.8 109414 2cbzA 237 48.89 2ff7A 247 50.30 c.37.1.12 133377 1uuzA 137 51.33 d.233.1.1 100024 2qi9C 249 51.44 1sltA 134 51.50 b.29.1.3 24186 1m2oB 190 51.53 c.37.1.8 78485 1ukvY 206 51.68 c.37.1.8 107918 1z3eB 73 52.03 a.60.3.1 124401 2ew1A 201 52.89 c.37.1.8 132446 1e0cA 271 52.89 c.46.1.2,c.46.1.2 32717,32718 1o69A 394 53.81 c.67.1.4 92560 1d1gA 168 53.87 c.71.1.1 34889 1r9cA 139 54.00 d.32.1.2 97255 2h17A 181 54.08 2pcjA 224 54.13 1ji0A 240 54.75 c.37.1.12 71665 2bmeA 186 57.00 c.37.1.8 128790 1x3sA 195 58.02 c.37.1.8 121670 2f9lA 199 58.15 c.37.1.8 133166 2p5sA 199 58.21 1b0uA 262 60.87 c.37.1.12 32370 1pjqA 457 63.09 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2pmkA 243 63.11 1yzgA 179 64.85 c.37.1.8 124276 2db1A 118 65.14 1tzjA 338 65.68 c.79.1.1 112868 2inbA 140 65.80 1gajA 257 67.70 c.37.1.12 60416 1lb2B 84 69.19 a.60.3.1 77871 1x1rA 178 69.74 c.37.1.8 121595 1sgwA 214 70.51 c.37.1.12 105541 2dykA 161 71.05 2b4uA 335 73.45 1y8xB 98 74.34 2ogeA 399 74.56 2dbyA 368 74.89 2atvA 196 74.97 c.37.1.8 127308 1wohA 305 75.29 c.42.1.1 109446 2qm8A 337 76.01 1uptA 171 76.31 c.37.1.8 99767 2hmvA 144 79.07 c.2.1.9 136615 1yzqA 170 79.12 c.37.1.8 124286 1j6oA 268 79.44 c.1.9.12 77088 1eejA 216 79.47 c.47.1.9,d.17.3.1 33057,38071 2k0qA 74 79.79 1t9hA 307 81.55 b.40.4.5,c.37.1.8 112358,112359 1vekA 84 82.12 a.5.2.1 113636 1jm6A 407 82.26 a.29.5.1,d.122.1.4 66876,66877 1mkyA 439 82.33 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2auwA 170 86.31 a.35.1.10,d.331.1.1 127339,127340 2yv5A 302 87.11