# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 7.31e-12 2gcxA 75 3.00e-11 1fx7A 230 2.13e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 3.45e-05 2qq9A 226 0.000141 1bi0 226 0.000234 2dtrA 226 0.000700 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.003146 1bymA 97 0.7434 b.34.1.2 24458 1pjzA 203 1.658 c.66.1.36 94794 2qu8A 228 1.889 1pujA 282 2.544 c.37.1.8 88294 1fzqA 181 3.258 c.37.1.8 32060 1sviA 195 4.386 c.37.1.8 106048 3cnlA 262 4.733 1puiA 210 5.119 c.37.1.8 88292 1wf3A 301 7.359 c.37.1.8,d.52.3.1 114574,114575 2e87A 357 7.482 2cxxA 190 7.608 c.37.1.8 131013 1va0A 239 8.714 c.90.1.1 119899 2gj8A 172 8.831 c.37.1.8 135270 2hjgA 436 12.46 1oixA 191 13.36 c.37.1.8 118710 2v9cA 215 15.57 1tq4A 413 16.50 c.37.1.8 107201 1zd9A 188 18.24 c.37.1.8 124938 2c81A 418 20.35 2bwjA 199 21.95 1u8zA 168 22.11 c.37.1.8 113212 2gjsA 176 22.27 c.37.1.8 135287 1egaA 301 23.62 c.37.1.8,d.52.3.1 32150,38836 1xtqA 177 23.68 c.37.1.8 122297 1h65A 270 24.31 c.37.1.8 65640 3defA 262 24.48 2qwvA 208 24.81 1nrjB 218 24.86 c.37.1.8 86125 1jeiA 53 24.99 a.140.1.1 62918 1z06A 189 27.43 c.37.1.8 124301 2dpxA 174 29.33 3bfkA 181 29.78 1h9fA 57 29.85 a.140.1.1 60826 2j0nA 200 30.02 a.250.1.1 137899 1gjjA 168 32.15 a.140.1.1,a.140.1.1 83291,83292 1uuzA 137 32.43 d.233.1.1 100024 1udxA 416 34.74 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1oivA 191 36.84 c.37.1.8 93076 1b9hA 388 37.24 c.67.1.4 34488 1tq6A 413 38.33 c.37.1.8 107202 1ukzA 203 38.95 c.37.1.1 31840 1lnzA 342 41.07 b.117.1.1,c.37.1.8 78112,78113 1l2tA 235 43.45 c.37.1.12 73514 2aznA 219 45.44 c.71.1.2 127608 2cbzA 237 48.20 1wmsA 177 49.72 c.37.1.8 109414 2h17A 181 50.26 1mdoA 393 50.70 c.67.1.4 79013 2db1A 118 51.25 2pzeA 229 51.31 1yzgA 179 52.95 c.37.1.8 124276 2qi9C 249 53.03 1tzjA 338 53.77 c.79.1.1 112868 2p5sA 199 54.48 3bn1A 373 55.02 1z3eB 73 55.14 a.60.3.1 124401 1ji0A 240 55.17 c.37.1.12 71665 2ew1A 201 55.62 c.37.1.8 132446 1b0uA 262 55.73 c.37.1.12 32370 1ukvY 206 56.33 c.37.1.8 107918 1lb2B 84 56.54 a.60.3.1 77871 1m2oB 190 57.63 c.37.1.8 78485 1r9cA 139 59.26 d.32.1.2 97255 2bmeA 186 60.08 c.37.1.8 128790 2f9lA 199 61.15 c.37.1.8 133166 2pcjA 224 62.27 2ff7A 247 62.92 c.37.1.12 133377 3c6cA 316 62.92 2pmkA 243 63.45 1y8xB 98 64.01 1d1gA 168 64.53 c.71.1.1 34889 1sltA 134 65.35 b.29.1.3 24186 1e0cA 271 66.57 c.46.1.2,c.46.1.2 32717,32718 1vekA 84 67.20 a.5.2.1 113636 1x3sA 195 67.39 c.37.1.8 121670 1gajA 257 68.21 c.37.1.12 60416 2qm8A 337 68.90 1sgwA 214 70.30 c.37.1.12 105541 1t9hA 307 74.13 b.40.4.5,c.37.1.8 112358,112359 1pjqA 457 74.93 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2atvA 196 75.92 c.37.1.8 127308 1cj3A 392 76.29 c.3.1.2,d.16.1.2 30347,37878 1x1rA 178 77.23 c.37.1.8 121595 1o69A 394 77.34 c.67.1.4 92560 2p4gA 270 77.44 2dykA 161 77.78 1wohA 305 78.10 c.42.1.1 109446 1uptA 171 78.96 c.37.1.8 99767 2dbyA 368 81.78 1ltlA 279 82.32 b.40.4.11 84701 1q15A 503 83.58 c.26.2.1,d.153.1.1 95538,95539 1yzqA 170 86.49 c.37.1.8 124286 1lbqA 362 86.65 c.92.1.1 77877 1j6oA 268 87.62 c.1.9.12 77088 2yv5A 302 87.88